Publications

A

Arora, Kashika and Maheshwari, Neeraj and Sahni, Girish (2020) Design of a thrombin inhibitory staphylokinase based plasminogen activator with anti-reocclusion potential. International journal of biological macromolecules, 144. pp. 791-800. ISSN 1879-0003

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Baindara, P and Nayudu, N and Korpole, S (2020) Whole genome mining reveals a diverse repertoire of lanthionine synthetases and lanthipeptides among the genus Paenibacillus. Journal of applied microbiology, 128 (2). pp. 473-490. ISSN 1365-2672

Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B (2020) Phylogenomic Insights into Diversity and Evolution of Nonpathogenic Strains Associated with Citrus. mSphere, 5 (2). e00087-20. ISSN 2379-5042

Bhalla, Sherry and Kaur, Harpreet and Kaur, Rishemjit and Sharma, Suresh and Raghava, G.P.S. (2020) Expression based biomarkers and models to classify early and late-stage samples of Papillary Thyroid Carcinoma. PloS one, 15 (4). e0231629. ISSN 1932-6203

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Chand, Subhash and Mahajan, Richi V and Prasad, Jai Prakash and Sahoo, Debendra K and Mihooliya, Kanti Nandan and Dhar, Mahesh S and Sharma, Girish (2020) A comprehensive review on microbial L-asparaginase: Bioprocessing, characterization and industrial applications. Biotechnology and applied biochemistry. ISSN 1470-8744

Chaudhry, Vasvi and Patil, Prabhu B (2020) Evolutionary insights into adaptation of Staphylococcus haemolyticus to human and non-human niches. Genomics, 112 (2). pp. 2052-2062. ISSN 1089-8646

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Dhall, Anjali and Patiyal, Sumeet and Kaur, Harpreet and Bhalla, Sherry and Arora, Chakit and Raghava, G.P.S. (2020) Computing Skin Cutaneous Melanoma Outcome From the HLA-Alleles and Clinical Characteristics. Frontiers in genetics, 11. p. 221. ISSN 1664-8021

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Hade, Mangesh Dattu and Sethi, Deepti and Datta, Himani and Singh, Sandeep and Thakur, Naveen and Chhaya, Ajay and Dikshit, Kanak L (2020) Truncated Hemoglobin O Carries an Autokinase Activity and Facilitates Adaptation of Under Hypoxia. Antioxidants & redox signaling, 32 (6). pp. 351-362. ISSN 1557-7716

Hira, Princy and Singh, Priya and Pinnaka, Anil Kumar and Korpole, Suresh and Lal, Rup (2020) Taxonomically Characterized and Validated Bacterial Species Based on 16S rRNA Gene Sequences from India During the Last Decade. Indian journal of microbiology, 60 (1). pp. 54-61. ISSN 0046-8991

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Joshi, Amaraja and Thite, Sonia and Dhotre, Dhiraj and Moorthy, Manju and Joseph, Neetha and Ramana, V Venkata and Shouche, Yogesh (2020) Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake. International journal of systematic and evolutionary microbiology, 70 (2). pp. 1106-1111. ISSN 1466-5034

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Katoch, Anjula and Choudhury, Anirban Roy (2020) Understanding the rheology of novel guar-gellan gum composite hydrogels.MATERIALS LETTERS, 263.

Kaundal, Soni and Deep, Amar and Kaur, Gundeep and Thakur, Krishan Gopal (2020) Molecular and Biochemical Characterization of YeeF/YezG, a Polymorphic Toxin-Immunity Protein Pair From . Frontiers in microbiology, 11. pp. 1-13. ISSN 1664-302X

Kaur, Amandeep and Bansal, Kanika and Patil, Prabhu B (2020) Extensive genomic rearrangements along with distinct mobilome and TALome is associated with extreme pathotypes of a rice pathogen. Genome biology and evolution. ISSN 1759-6653 (In Press)

Kaur, Harpreet and Dhall, Anjali and Kumar, Rajesh and Raghava, G.P.S. (2020) Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data. Frontiers in genetics, 10. p. 1306. ISSN 1664-8021

Kaur, Kamaldeep and Khatri, Indu and Akhtar, Akil and Subramanian, Srikrishna and Ramya, T N C (2020) Metagenomics analysis reveals features unique to Indian distal gut microbiota. PloS one, 15 (4). e0231197. ISSN 1932-6203

Kaur, T and Dahiya, S and Satija, S H and Nawal, S J and Kshetrimayum, N and Ningthoujam, J and Chahal, A K and Rao, Alka(2020) Foldscope as a primary diagnostic tool for oral and urinary tract infections and its effectiveness in oral health education.Journal of microscopy. ISSN 1365-2818

Khanam, Taran and Afsar, Mohammad and Shukla, Ankita and Alam, Faiyaz and Kumar, Sanjay and Soyar, Horam and Dolma, Kunzes and Pasupuleti, Mukesh and Srivastava, Kishore Kumar and Ampapathi, Ravi Sankar and Ramachandran, Ravishankar(2020) M. tuberculosis class II apurinic/ apyrimidinic-endonuclease/3'-5' exonuclease (XthA) engages with NAD+-dependent DNA ligase A (LigA) to counter futile cleavage and ligation cycles in base excision repair. Nucleic acids research. ISSN 1362-4962

Kumar, Vinod and Kumar, Rajesh and Agrawal, Piyush and Patiyal, Sumeet and Raghava, G.P.S. (2020) A Method for Predicting Hemolytic Potency of Chemically Modified Peptides From Its Structure. Frontiers in pharmacology, 11. ISSN 1663-9812

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Lathwal, Anjali and Kumar, Rajesh and Raghava, G.P.S. (2020) Computer-aided designing of oncolytic viruses for overcoming translational challenges of cancer immunotherapy. Drug discovery today. ISSN 1878-5832 (In Press)

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Mihooliya, Kanti N and Nandal, Jitender and Kumari, Alka and Nanda, Sidhanta and Verma, Himanshu and Sahoo, Debendra K(2020) Studies on efficient production of a novel l-asparaginase by a newly isolated IGS-131 and its heterologous expression in . 3 Biotech, 10 (4). p. 148. ISSN 2190-572X

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Patiyal, Sumeet and Agrawal, Piyush and Kumar, Vinod and Dhall, Anjali and Kumar, Rajesh and Mishra, Gaurav and Raghava, G.P.S. (2020) NAGbinder: An approach for identifying N-acetylglucosamine interacting residues of a protein from its primary sequence. Protein science : a publication of the Protein Society, 29 (1). pp. 201-210. ISSN 1469-896X

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Richa, . and Roy Choudhury, Anirban (2020) Synthesis of a novel gellan-pullulan nanogel and its application in adsorption of cationic dye from aqueous medium. Carbohydrate polymers, 227. p. 115291. ISSN 1879-1344

Richa, . and Roy Choudhury, Anirban (2020) pH mediated rheological modulation of chitosan hydrogels. International journal of biological macromolecules, 156. pp. 591-597. ISSN 1879-0003

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Sharma, Vandna and Kumar, Shekhar and Sahni, Girish (2020) Kringles of substrate plasminogen provide a "catalytic switch" in plasminogen to plasmin turnover by Streptokinase. The Biochemical journal, 477 (5). pp. 953-970. ISSN 1470-8728

Shikha, Sristy and Chaudhuri, Saumya Ray and Bhattacharyya, Mani Shankar (2020) Facile One Pot Greener Synthesis of Sophorolipid Capped Gold Nanoparticles and its Antimicrobial Activity having Special Efficacy Against Gram Negative Vibrio cholerae.Scientific reports, 10 (1). p. 1463. ISSN 2045-2322

Singh, Prabhat Ranjan and Anil Kumar, Vijjamarri and Sarkar, Dibyendu (2020) Metabolic switching of during hypoxia is controlled by the virulence regulator PhoP. Journal of bacteriology, 202 (7). e00705-19. ISSN 1098-5530

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Tandel, Nikunj and Joseph, Anish Z and Joshi, Aishwarya and Shrama, Priya and Mishra, Ravi Pn and Tyagi, Rajeev K and Bisen, Prakash S (2020) An evaluation of liposome-based diagnostics of pulmonary and extrapulmonary tuberculosis. Expert review of molecular diagnostics. ISSN 1744-8352

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Urvashi, . and Sharma, Deepika and Sharma, Shikha and Pal, Vijay and Lal, Rup and Patil, Prabhu and Grover, Vishakha and Korpole, Suresh (2020) Bacterial Populations in Subgingival Plaque Under Healthy and Diseased Conditions: Genomic Insights into Oral Adaptation Strategies by sp. Strain DISK7. Indian journal of microbiology, 60 (1). pp. 78-86. ISSN 0046-8991

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Vaid, Bhavna and Chopra, Bhupinder Singh and Raut, Sachin and Sagar, Amin and Badmalia, Maulik D and Ashish, . and Khatri, Neeraj (2020) Antioxidant and Wound Healing Property of Gelsolin in 3T3-L1 Cells. Oxidative medicine and cellular longevity, 2020. p. 4045365. ISSN 1942-0994

A

Agrawal, Piyush (2019) Computer aided drug design based on understanding protein-ligand interaction at genome scale. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Agrawal, Piyush and Singh, Harinder and Srivastava, Hemant Kumar and Singh, Sandeep and Kishore, Gaurav and Raghava, G.P.S.(2019) Benchmarking of different molecular docking methods for protein-peptide docking. BMC bioinformatics, 19 (Suppl ). p. 426. ISSN 1471-2105

Anand, Shashi and Ganaie, Arsheed Ahmad and Sharma, Charu (2019) Differential thermal stability, conformational stability and unfolding behavior of Eis proteins from Mycobacterium smegmatis and Mycobacterium tuberculosis. PloS one, 14 (3). e0213933. ISSN 1932-6203

Arora, Kashika and Maheshwari, Neeraj and Sahni, Girish (2019) Design of a thrombin inhibitory staphylokinase based plasminogen activator with anti-reocclusion potential. International journal of biological macromolecules. ISSN 1879-0003

B

Bajaj, Priyanka and Mahajan, Ritu (2019) Cellulase and xylanase synergism in industrial biotechnology. Applied microbiology and biotechnology, 103 (21-22). pp. 8711-8724. ISSN 1432-0614

Bhagyaraj, Ella and Ahuja, Nancy and Kumar, Sumit and Tiwari, Drishti and Gupta, Shalini and Nanduri, Ravikanth and Gupta, Pawan(2019) TGF-β induced chemoresistance in liver cancer is modulated by xenobiotic nuclear receptor PXR. Cell cycle (Georgetown, Tex.), 18 (24). pp. 3589-3602. ISSN 1551-4005

Bhalla, Sherry and Kaur, Harpreet and Dhall, Anjali and Raghava, Gajendra P S (2019) Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients. Scientific reports, 9 (1). p. 15790. ISSN 2045-2322

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Chakraborty, Poushali and Kumar, Ashwani (2019) The extracellular matrix of mycobacterial biofilms: could we shorten the treatment of mycobacterial infections? Microbial cell (Graz, Austria), 6 (2). pp. 105-122. ISSN 2311-2638

Chatterjee, Deepyan and Kaur, Gurkirat and Muradia, Shilpa and Singh, Balvinder and Agrewala, J N (2019) ImmtorLig_DB: repertoire of virtually screened small molecules against immune receptors to bolster host immunity. Scientific reports, 9 (1). p. 3092. ISSN 2045-2322

Chaudhary, Shilpa and Sonkusre, Praveen and Bhasin, K K and Sabherwal, Priyanka and Suri, C Raman (2019) Trace detection of some nitro-explosives using thermal mediated immunochemical defragmented method. Biosensors & bioelectronics, 126. pp. 590-595. ISSN 1873-4235

Chaudhary, Shilpa and Sonkusre, Praveen and Chopra, Adity and Bhasin, K K and Suri, C Raman (2019) UV-FIA: UV-induced fluoro-immunochemical assay for ultra-trace detection of PETN, RDX, and TNT. Analytica chimica acta, 1077. pp. 266-272. ISSN 1873-4324

Chaudhary, Surbhi (2019) Understanding the role of Glyceraldehyde 3- phosphate dehydrogenase in maintaining cellular homeostasis. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Dhiman, Asmita and Patidar, Anil and Jakhar, Priyanka and Jaswal, Pallavi and Sharma, Kapil and Sheokand, Navdeep and Malhotra, Himanshu and Raje, Chaaya Iyengar and Raje, Manoj(2019) Trafficking of a multifunctional protein by endosomal micro-autophagy: linking two independent unconventional secretory pathways. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. fj201802102R. ISSN 1530-6860

Choudhary, Pravinkumar and Nagar, Rupa and Singh, Vaidhvi and Bhat, Aadil Hussain and Sharma, Yogita and Rao, Alka (2019)ProGlycProt V2.0, a repository of experimentally validated glycoproteins and protein glycosyltransferases of prokaryotes.Glycobiology. ISSN 1460-2423

Choukate, Komal and Gupta, Aanchal and Basu, Brohmomoy and Virk, Karman and Ganguli, Munia and Chaudhuri, Barnali (2019)Higher order assembling of the mycobacterial polar growth factor DivIVA/Wag31. Journal of structural biology. p. 107429. ISSN 1095-8657

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Deep, Amar (2019) Understanding the molecular basis for substrate specificity and mechanism of action in VapBC, toxin-antitoxin modules, from Mycobacterium tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

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Garg, Gaurav and Ali, Vahab and Singh, Kuljit and Gupta, Parool and Ganguly, Ashish and Sahasrabuddhe, Amogh A and Das, Pradeep (2019) Quantitative secretome analysis unravels new secreted proteins in Amphotericin B resistant Leishmania donovani.Journal of proteomics, 207. p. 103464. ISSN 1876-7737

Gaur, Deepika (2019) Mechanistic insights into the role of cytosolic Hsp70 in regulating Hsp90 chaperone cycle. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Gundawar, Krishna and Kumari, Sumeeta and Sharma, Shikha and Grover, Vishakha and Patil, Prabhu B and Korpole, Suresh (2019)Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent. International journal of systematic and evolutionary microbiology, 69 (3). pp. 672-678. ISSN 1466-5034

Gupta, Ashok Kumar and Chopra, Bhupinder Singh and Vaid, Bhavna and Sagar, Amin and Raut, Sachin and Badmalia, Maulik Dand Ashish, . and Khatri, Neeraj (2019) Protective effects of gelsolin in acute pulmonary thromboembolism and thrombosis in the carotid artery of mice. PloS one, 14 (4). ISSN 1932-6203

Gupta, Vasundhera and Singh, Shelley Sardul and Sidhu, Chandni and Grover, Vishakha and Pinnaka, Anil Kumar and Korpole, Suresh (2019) Virgicin, a novel lanthipeptide from Virgibacillus sp. strain AK90 exhibits inhibitory activity against Gram-positive bacteria. World journal of microbiology & biotechnology, 35 (9). p. 133. ISSN 1573-0972

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Jain, Rishu and Sharma, Deepak and Kumar, Rakesh and Kumar, Rajesh (2019) Structural, kinetic and thermodynamic characterizations of SDS-induced molten globule state of a highly negatively charged cytochrome c. Journal of biochemistry, 165 (2). pp. 125-137. ISSN 1756-2651

Jangra, Manoj (2019) Exploitation of Microbial Resources for Antimicrobial Compounds and Evaluation of their potential to combat antimicrobial resistance. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Jangra, Manoj and Kaur, Manpreet and Nandanwar, Hemraj (2019) In vitro studies on a natural lantibiotic, paenibacillin: A new-generation antibacterial drug to overcome multidrug-resistance. International Journal of Antimicrobial Agent. (In Press)

Jangra, Manoj and Kaur, Manpreet and Podia, Mansi and Tambat, Rushikesh and Singh, Vidhu and Chandal, Nishtha and Mahey, Nisha and Maurya, Navdezda and Nandanwar, Hemraj (2019) Purification and biological activity of natural variants synthesized by tridecaptin M gene cluster and in vitro drug-kinetics of this antibiotic class. Scientific reports, 9 (1). p. 18870. ISSN 2045-2322

Jangra, Manoj and Kaur, Manpreet and Tambat, Rushikesh and Rana, Rohit and Maurya, Sushil K and Khatri, Neeraj and Ghafur, Abdul and Nandanwar, Hemraj (2019) Tridecaptin M, a New Variant Discovered in Mud Bacterium, Shows Activity against Colistin- and Extremely Drug-Resistant . Antimicrobial agents and chemotherapy, 63 (6). pp. 1-16. ISSN 1098-6596

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Kalia, Shreya and Roy Choudhury, Anirban (2019) Synthesis and rheological studies of a novel composite hydrogel of xanthan, gellan and pullulan. International journal of biological macromolecules, 137. pp. 475-482. ISSN 1879-0003

Karan, Sumita and Pratap, Bhanu and Ashish, . and Saxena, Ajay K (2019) Low-resolution SAXS and structural dynamics analysis on M. tuberculosis GmhB enzyme involved in GDP-heptose biosynthetic pathway. International journal of biological macromolecules, 136. pp. 676-685. ISSN 1879-0003

Kaur, Dilraj and Patiyal, Sumeet and Sharma, Neelam and Usmani, Salman Sadullah and Raghava, G.P.S. (2019) PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands. Database : the journal of biological databases and curation, 2019. ISSN 1758-0463

Kaur, Gurpreet and Chander, Atul Munish and Kaur, Gurwinder and Maurya, Sudeep Kumar and Nadeem, Sajid and Kochhar, Rakeshand Bhadada, Sanjay Kumar and Agrewala, J N and Mayilraj, Shanmugam (2019) A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis. BMC microbiology, 19 (1). p. 64. ISSN 1471-2180

Kaur, Harpreet and Bhalla, Sherry and Raghava, Gajendra P S (2019) Classification of early and late stage liver hepatocellular carcinoma patients from their genomics and epigenomics profiles. PloS one, 14 (9). e0221476. ISSN 1932-6203

Kaur, Manpreet and Jangra, Manoj and Singh, Harjodh and Tambat, Rushikesh and Singh, Nittu and Jachak, Sanjay M and Mishra, Sunita and Sharma, Charu and Nandanwar, Hemraj and Pinnaka, Anil Kumar (2019) Pseudomonas koreensis Recovered From Raw Yak Milk Synthesizes a β-Carboline Derivative With Antimicrobial Properties. Frontiers in microbiology, 10. p. 1728. ISSN 1664-302X

Kaur, Navneet and Sinha, Prakash Kumar and Sahni, Girish (2019) Site-specific PEGylation of micro-plasmin for improved thrombolytic therapy through engineering enhanced resistance against serpin mediated inhibition. PloS one, 14 (5). e0217234. ISSN 1932-6203

Khairnar, Aasawari and Sharma, Shailza and Bishnoi, Ritika and Ramya, T N C (2019) Effect of naturally occurring variations of the F-type lectin sequence motif on glycan binding: studies on F-type lectin domains with typical and atypical sequence motifs. IUBMB life, 71 (3). pp. 385-397. ISSN 1521-6551

Khatri, Indu and Sharma, Gaurav and Subramanian, Srikrishna (2019) Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina, and insights into its probiotic properties. BMC microbiology, 19 (1). p. 307. ISSN 1471-2180

Kumar, Ajay and Boradia, Vishant Mahendra and Thakare, Ritesh and Singh, Alok Kumar and Gani, Zahid and Das, Swetarka and Patidar, Anil and Dasgupta, Arunava and Chopra, Sidharth and Raje, Manoj and Raje, Chaaya Iyengar (2019) Repurposing ethyl bromopyruvate as a broad-spectrum antibacterial. The Journal of antimicrobial chemotherapy, 74 (4). pp. 912-920. ISSN 1460-2091

Kumar, Bhupender and Katoch, Anjula and Prasad, Gandham S and Roy Choudhury, Anirban (2019) Understanding the Effect of Impeller Configurations on Pullulan Production by RBF 4A3. Frontiers in bioengineering and biotechnology, 7. p. 223. ISSN 2296-4185

Kumar, Rajesh and Patiyal, Sumeet and Kumar, Vinod and Nagpal, Gandharva and Raghava, G.P.S. (2019) In Silico Analysis of Gene Expression Change Associated with Copy Number of Enhancers in Pancreatic Adenocarcinoma. International journal of molecular sciences, 20 (14). ISSN 1422-0067

Kumar, Rakesh and Mohammad, Ashu and Saini, Reena V and Chahal, Anterpreet and Wong, Chi-Ming and Sharma, Deepak and Kaur, Sukhvir and Kumar, Vikas and Winterbourn, Christine C and Saini, Adesh K (2019) Deciphering the in vivo redox behavior of human peroxiredoxins I and II by expressing in budding yeast. Free radical biology & medicine, 145. pp. 321-329. ISSN 1873-4596

Kumar, Sunil and Patil, Prashant P and Singhal, Lipika and Ray, Pallab and Patil, Prabhu B and Gautam, Vikas (2019) Molecular epidemiology of carbapenem-resistant Acinetobacter baumannii isolates reveals the emergence of bla and bla encoding international clones in India. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 75. p. 103986. ISSN 1567-7257

Kumar, Vignesh and Peter, Joshua Jebakumar and Sagar, Amin and Ray, Arjun and Jha, Mainak Pratim and Rebeaud, Mathieu E and Tiwari, Satyam and Goloubinoff, Pierre and Ashish, . and Mapa, Koyeli (2019) Inter-domain communication suppressing high intrinsic ATPase activity of Sse1 is essential for its co-dissaggregase activity with Ssa1. The FEBS journal. ISSN 1742-4658

Kundu, Debasree (2019) Deciphering mechanism of action of antifungal agents using Saccharomyces cerevisiae as model. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

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Loharch, Saurabh and Karmahapatra, Vikrant and Gupta, Pawan and Madathil, Rethi and Parkesh, Raman (2019) Integrated Chemoinformatics Approaches Toward Epigenetic Drug Discovery. In: Structural Bioinformatics: Applications in Preclinical Drug Discovery Process. Springer Nature, Switzerland, pp. 247-269.

Loharch, Saurabh and Parkesh, Raman (2019) Epigenetic drug discovery: systematic assessment of chemical space. Future medicinal chemistry, 11 (21). ISSN 1756-8927

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Mahajan, Sonal (2019) Studies on engineering of Fucolectins and Fucolectin-Mediated targeting of Alginate Lyases to Pseudomonas Biofilms. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Malhotra, Himanshu and Kumar, Manoj and Chauhan, Anoop Singh and Dhiman, Asmita and Chaudhary, Surbhi and Patidar, Anil and Jaiswal, Pallavi and Sharma, Kapil and Sheokand, Navdeep and Raje, Chaaya Iyengar and Raje, Manoj (2019) Moonlighting Protein Glyceraldehyde-3-Phosphate Dehydrogenase: A Cellular Rapid-Response Molecule for Maintenance of Iron Homeostasis in Hypoxia.Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology, 52 (3). pp. 517-531. ISSN 1421-9778

Maurya, Navdezda and Jangra, Manoj and Tambat, Rushikesh and Nandanwar, Hemraj (2019) Alliance of Efflux Pumps with β-Lactamases in Multidrug-Resistant Isolates. Microbial drug resistance (Larchmont, N.Y.), 25 (8). pp. 1155-1163. ISSN 1931-8448

Mavi, Parminder Singh and Singh, Shweta and Kumar, Ashwani (2019) Reductive Stress: New Insights in Physiology and Drug Tolerance of . Antioxidants & redox signaling. ISSN 1557-7716

Monga, Isha and Kumar, Manoj (2019) Computational Resources for Prediction and Analysis of Functional miRNA and Their Targetome. Methods in molecular biology (Clifton, N.J.), 1912. pp. 215-250. ISSN 1940-6029

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Nagar, Rupa and Rao, Alka (2019) In Vitro Synthesis of Bioactive Glycovariants of Enterocin 96, an Antimicrobial Peptide from Enterococcus faecalis. Methods in molecular biology (Clifton, N.J.), 1954. pp. 279-296. ISSN 1940-6029

Nanduri, Ravikanth and Kalra, Rashi and Bhagyaraj, Ella and Chacko, Anuja P and Ahuja, Nancy and Tiwari, Drishti and Kumar, Sumit and Jain, Monika and Parkesh, Raman and Gupta, Pawan (2019) AutophagySMDB: a curated database of small molecules that modulate protein targets regulating autophagy. Autophagy, 15 (7). pp. 1280-1295. ISSN 1554-8635

Negi, Shikha and Das, Deepjyoti Kumar and Pahari, Susanta and Nadeem, Sajid and Agrewala, Javed N (2019) Potential Role of Gut Microbiota in Induction and Regulation of Innate Immune Memory. Frontiers in immunology, 10. p. 2441. ISSN 1664-3224

Negi, Shikha and Pahari, Susanta and Bashir, Hilal and Agrewala, J N (2019) Gut Microbiota Regulates Mincle Mediated Activation of Lung Dendritic Cells to Protect Against . Frontiers in immunology, 10. p. 1142. ISSN 1664-3224

Negi, Shikha and Pahari, Susanta and Das, Deepjyoti Kumar and Khan, Nargis and Agrewala, J N (2019) Curdlan Limits Survival Through STAT-1 Regulated Nitric Oxide Production. Frontiers in microbiology, 10. p. 1173. ISSN 1664-302X

P

Pahari, Susanta and Negi, Shikha and Aqdas, Mohammad and Arnett, Eusondia and Schlesinger, Larry S and Agrewala, Javed N(2019) Induction of autophagy through CLEC4E in combination with TLR4: an innovative strategy to restrict the survival of .Autophagy. pp. 1-23. ISSN 1554-8635

Pal, Yash and Mayilraj, Shanmugam and Paul, Mohit and Schumann, Peter and Krishnamurthi, Srinivasan (2019) Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site. International journal of systematic and evolutionary microbiology, 69 (8). pp. 2555-2564. ISSN 1466-5034

Passi, Anurag and Jolly, Bani and Sharma, Tina and Pandya, Ashma and Bhardwaj, Anshu (2019) Data-Driven Systems Level Approaches for Drug Repurposing: Combating Drug Resistance in Priority Pathogens. In: In Silico Drug Design: Repurposing Techniques and Methodologies. Elsevier Science, USA, pp. 229-253. ISBN 978-0-12-816125-8

Pathania, Shivalika and Randhawa, Vinay and Kumar, Manoj (2019) Identifying potential entry inhibitors for emerging Nipah virus by molecular docking and chemical-protein interaction network. Journal of biomolecular structure & dynamics. pp. 1-18. ISSN 1538-0254

Patidar, Anil (2019) Intracellular trafficking and delivery of iron carrier proteins by Glyceraldehde-3-phosphate dehydrogenase. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

Patiyal, Sumeet and Agrawal, Piyush and Kumar, Vinod and Dhall, Anjali and Kumar, Rajesh and Mishra, Gaurav and Raghava, Gajendra P S (2019) NAGbinder: An approach for identifying N-acetylglucosamine interacting residues of a protein from its primary sequence. Protein science : a publication of the Protein Society. ISSN 1469-896X

R

Raghav, Pawan Kumar and Kumar, Rajesh and Kumar, Vinod and Raghava, Gajendra P S (2019) Docking-based approach for identification of mutations that disrupt binding between Bcl-2 and Bax proteins: Inducing apoptosis in cancer cells. Molecular genetics & genomic medicine, 7 (11). e910. ISSN 2324-9269

Rajput, Akanksha and Kumar, Archit and Kumar, Manoj (2019) Computational Identification of Inhibitors Using QSAR Approach Against Nipah Virus. Frontiers in pharmacology, 10. p. 71. ISSN 1663-9812

Richa, . and Roy Choudhury, Anirban (2019) Synthesis and rheological characterization of a novel thermostable quick setting composite hydrogel of gellan and pullulan. International journal of biological macromolecules, 125. pp. 979-988. ISSN 1879-0003

Richa, Richa and Roy Choudhury, Anirban (2019) Exploration of polysaccharide based nanoemulsions for stabilization and entrapment of curcumin. International journal of biological macromolecules. ISSN 1879-0003

S

Saini, Ankita and Mahajan, Sahil and Bhagyaraj, Ella and Kalra, Rashi and Nanduri, Ravikanth and Gupta, Ravi and Khatri, Neerajand Gupta, Pawan (2019) An Accord of Nuclear Receptor Expression in CD4 T Cells in Rheumatoid Arthritis. ImmunoHorizons, 3 (8). pp. 402-411. ISSN 2573-7732

Sajid, Mohammad and Agrewala, J N (2019) Low prevalence of anti-xenobiotic antibodies among the occupationally exposed individuals is associated with a high risk of cancer. Cancer medicine, 8 (1). pp. 246-260. ISSN 2045-7634

Sevalkar, Ritesh Rajesh and Arora, Divya and Singh, Prabhat Ranjan and Singh, Ranjeet and Nandicoori, Vinay K and Karthikeyan, Subramanian and Sarkar, Dibyendu (2019) Functioning of Mycobacterial Heat Shock Repressors Requires the Master Virulence Regulator PhoP. Journal of bacteriology, 201 (12). ISSN 1098-5530

Sidhu, Chandni and Solanki, Vipul and Pinnaka, Anil Kumar and Thakur, Krishan Gopal (2019) Structure Elucidation and Biochemical Characterization of Environmentally Relevant Novel Extradiol Dioxygenases Discovered by a Functional Metagenomics Approach.mSystems, 4 (6). ISSN 2379-5077

Singaraju, G S and Sagar, A and Kumar, A and Samuel, J S and Hazra, J P and Sannigrahi, M K and Yennamalli, R M and Ashish, Fnu and Rakshit, S (2019) Structural basis of the strong cell-cell junction formed by cadherin-23. The FEBS journal. ISSN 1742-4658

Singh, Balveer and Bisht, Kamlesh K and Upadhyay, Udita and Kushwaha, Avinash Chandra and Nanda, Jagpreet Singh and Srivastava, Suchita and Saini, Jai Kumar and Klar, Amar J S and Singh, Jagmohan (2019) Role of Cdc23/Mcm10 in generating the ribonucleotide imprint at the mat1 locus in fission yeast. Nucleic acids research. ISSN 1362-4962

Singh, Harjodh and Kaur, Manpreet and Jangra, Manoj and Mishra, Sunita and Nandanwar, Hemraj and Pinnaka, Anil Kumar (2019)Antimicrobial properties of the novel bacterial isolate Paenibacilllus sp. SMB1 from a halo-alkaline lake in India. Scientific reports, 9 (1). p. 11561. ISSN 2045-2322

Singh, Pargat and Bharti, . and Kumar, Rajesh and Bhalla, Vijayender (2019) Gold nanoparticle triggered siloxane formation for polymerization based amplification in enzyme free visual immunoassay. Analytica chimica acta, 1078. pp. 151-160. ISSN 1873-4324

Singh, Pargat and Kakkar, Saloni and Bharti, . and Kumar, Rajesh and Bhalla, Vijayender (2019) Rapid and sensitive colorimetric detection of pathogens based on silver-urease interactions. Chemical communications (Cambridge, England), 55 (33). pp. 4765-4768. ISSN 1364-548X

Singh, Shweta and Sran, Kulwinder Singh and Pinnaka, Anil Kumar and Roy Choudhury, Anirban (2019) Purification, characterization and functional properties of exopolysaccharide from a novel halophilic Natronotalea sambharensis sp. nov. International journal of biological macromolecules, 136. pp. 547-558. ISSN 1879-0003

Singh, Vipin and Jolly, Bani and Rajput, Neeraj K and Pramanik, Sayan and Bhardwaj, Anshu (2019) MtBrowse: An integrative genomics browser for human mitochondrial DNA. Mitochondrion, 48. pp. 31-36. ISSN 1872-8278

Sran, Kulwinder Singh and Bisht, Bhawana and Mayilraj, Shanmugam and Choudhury, Anirban Roy (2019) Structural characterization and antioxidant potential of a novel anionic exopolysaccharide produced by marine Microbacterium aurantiacum FSW-25.International journal of biological macromolecules. ISSN 1879-0003

Sran, Kulwinder Singh and Sundharam, Shiva S and Krishnamurthi, S and Roy Choudhury, Anirban (2019) Production, characterization and bio-emulsifying activity of a novel thermostable exopolysaccharide produced by a marine strain of Rhodobacter johrii CDR-SL 7Cii. International journal of biological macromolecules, 127. pp. 240-249. ISSN 1879-0003

Srinivasan, Vijaya Bharathi and Rajamohan, Govindan (2019) Genome analysis of urease positive Serratia marcescens, co-producing SRT-2 and AAC(6')-Ic with multidrug efflux pumps for antimicrobial resistance. Genomics, 111 (4). pp. 653-660. ISSN 1089-8646

Sudha Rani, P and Saini, Mohit Kumar and Pinnaka, Anil Kumar and Sampath Kumar, G and Kumar, Shekar and Vemuluri, Venkata Ramana and Tanuku, Naga Radha Srinivas (2019) Shewanella submarina sp. nov., a gammaproteobacterium isolated from marine water. International journal of systematic and evolutionary microbiology, 69 (1). pp. 39-45. ISSN 1466-5034

T

Tambat, Rushikesh and Jangra, Manoj and Mahey, Nisha and Chandal, Nishtha and Kaur, Manpreet and Chaudhary, Surbhi and Verma, Dipesh Kumar and Thakur, Krishan Gopal and Raje, Manoj and Jachak, Sanjay and Khatri, Neeraj and Nandanwar, Hemraj(2019) Microbe-Derived Indole Metabolite Demonstrates Potent Multidrug Efflux Pump Inhibition in . Frontiers in microbiology, 10. p. 2153. ISSN 1664-302X

Thakur, Naveen (2019) Molecular Characterization of Mycobacterial Flavohemoglobins. PhD thesis, ACSIR,IMTECH,Chandigarh.

Tuli, Amit and Sharma, Mahak (2019) How to do business with lysosomes: Salmonella leads the way. Current opinion in microbiology, 47. pp. 1-7. ISSN 1879-0364

U

Usmani, Salman Sadullah and Agrawal, Piyush and Sehgal, Manika and Patel, Pradeep Kumar and Raghava, G.P.S. (2019)ImmunoSPdb: an archive of immunosuppressive peptides. Database : the journal of biological databases and curation, 2019. ISSN 1758-0463

V

Vandana, . and Kantipudi, Satish and Maheshwari, Neeraj and Sharma, Sheetal and Sahni, Girish (2019) Cloning and purification of an anti-thrombotic, chimeric Staphylokinase in Pichia pastoris. Protein expression and purification, 162. pp. 1-8. ISSN 1096-0279

Verma, Ashish and Pal, Yash and Ojha, Anup Kumar and Kumari, Munesh and Khatri, Indu and Rameshkumar, N and Schumann, Peter and Dastager, Syed G and Mayilraj, Shanmugam and Subramanian, Srikrishna and Krishnamurthi, Srinivasan (2019)Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov. Systematic and applied microbiology, 42 (3). pp. 360-372. ISSN 1618-0984

Verma, Dipesh Kumar (2019) Structural and functional characterization of human Angiopoietin-like proteins. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Verma, Dipesh Kumar and Baral, Ishita and Kumar, Atul and Prasad, Senthil E and Thakur, Krishan Gopal (2019) Discovery of bacteriorhodopsins in Haloarchaeal species isolated from Indian solar salterns: deciphering the role of the N-terminal residues in protein folding and functional expression. Microbial biotechnology. pp. 1-13. ISSN 1751-7915

Vidyarthi, Aurobind and Agnihotri, Tapan and Khan, Nargis and Singh, Sanpreet and Tewari, Manoj K and Radotra, Bishan D and Chatterjee, Deepyan and Agrewala, Javed N (2019) Predominance of M2 macrophages in gliomas leads to the suppression of local and systemic immunity. Cancer immunology, immunotherapy : CII, 68 (12). pp. 1995-2004. ISSN 1432-0851

A

Agarwal, Sakshi and Tiwari, Prabhakar and Deep, Amar and Kidwai, Saqib and Gupta, Shamba and Thakur, Krishan Gopal and Singh, Ramandeep (2018) System wide analysis unravels differential regulation and in vivo essentiality of VapBC TA systems from Mycobacterium tuberculosis. The Journal of Infectious Diseases. ISSN 0022-1899

Agrawal, Piyush and Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Rajesh and Sharma, Meenu and Raghava, G.P.S.(2018) In silco Approach for Prediction of Antifungal Peptides. Frontiers in microbiology, 9. p. 323. ISSN 1664-302X

Ahmad, Zeeshan (2018) The role of heme oxygenase-1 and its reaction products in modulation of cellular signalling:New insights into tuberculosis pathogenesis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Anand, Shashi (2018) Biochemical and Biophysical characterization of Eis protein from Mycobacteria. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Anand, Shashi and Sharma, Charu (2018) Glycine-rich loop encompassing active site at interface of hexameric M. tuberculosis Eis protein contributes to its structural stability and activity. International journal of biological macromolecules, 109. pp. 124-135. ISSN 1879-0003

Aqdas, Mohammad (2018) Effect of immunomodulation on the regime of anti-tuberculosis drugs-against Mycobacterium tuberculosis.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Arya, Subhash B and Kumar, Gaurav and Kaur, Harmeet and Kaur, Amandeep and Tuli, Amit (2018) ARL11 regulates lipopolysaccharide-stimulated macrophage activation by promoting mitogen-activated protein kinase (MAPK) signaling. The Journal of biological chemistry, 293 (25). pp. 9892-9909. ISSN 1083-351X

B

Badmalia, Maulik D and Sharma, Pankaj and Yadav, Shiv Pratap Singh and Singh, Shikha and Khatri, Neeraj and Garg, Renu and Ashish, . (2018) Bonsai Gelsolin Survives Heat Induced Denaturation by Forming β-Amyloids which Leach Out Functional Monomer.Scientific reports, 8 (1). p. 12602. ISSN 2045-2322

Baindara, Piyush and Korpole, Suresh and Grover, Vishakha (2018) Bacteriocins: perspective for the development of novel anticancer drugs. Applied microbiology and biotechnology, 102 (24). pp. 10393-10408. ISSN 1432-0614

Bansal, Kanika (2018) Evolutionary genomics of Xanthomonas citri and its ecological relatives. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Bansal, Kanika and Kumar, Sanjeet and Patil, Prabhu B (2018) Complete Genome Sequence Reveals Evolutionary Dynamics of an Emerging and Variant Pathovar of Xanthomonas euvesicatoria. Genome biology and evolution, 10 (11). pp. 3104-3109. ISSN 1759-6653

Bessa, Cláudia and Soares, Joana and Raimundo, Liliana and Loureiro, Joana B and Gomes, Célia and Reis, Flávio and Soares, Miguel L and Santos, Daniel and Dureja, Chetna and Chaudhuri, Saumya R and Lopez-Haber, Cynthia and Kazanietz, Marcelo G and Gonçalves, Jorge and Simões, Maria F and Rijo, Patrícia and Saraiva, Lucília (2018) Discovery of a small-molecule protein kinase Cδ-selective activator with promising application in colon cancer therapy. Cell death & disease, 9 (2). p. 23. ISSN 2041-4889

Bhagyaraj, Ella and Tiwari, Drishti and Ahuja, Nancy and Nanduri, Ravikanth and Saini, Ankita and Kalra, Rashi and Kumar, Sumitand Janmeja, Ashok Kumar and Gupta, Pawan (2018) A human xenobiotic nuclear receptor contributes to nonresponsiveness ofto the antituberculosis drug rifampicin. The Journal of biological chemistry, 293 (10). pp. 3747-3757. ISSN 1083-351X

Bhardwaj, Amit (2018) Crosstalk between Escherichia Coli B-Clamp, DNA polymerase and DNA Ligase to maintain Genome intergrity.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Bhardwaj, Amit and Ghose, Debarghya and Thakur, Krishan Gopal and Dutta, Dipak (2018) Escherichia coli β-clamp slows down DNA polymerase I dependent nick translation while accelerating ligation. PloS one, 13 (6). e0199559. ISSN 1932-6203

Bhatt, SA and Iqbal, Iram Khan and Kumar, Ashwani (2018) Quantification of the Metabolic Heterogeneity in Mycobacterial Cells Through the Measurement of the NADH/NAD+ Ratio Using a Genetically Encoded Sensor. Methods in Molecular Biology, 1745. pp. 261-275. ISSN 1064-3745

Bijlani, Swati and Nahar, Anubhav S. and Ganesan, K. (2018) Improved Tet-On and Tet-Off systems for tetracycline-regulated expression of genes in Candida. Current Genetics, 64 (1). pp. 303-316. ISSN 0172-8083

Bishnoi, Ritika and Mahajan, Sonal and Ramya, T N C (2018) An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase. Glycobiology, 28 (11). pp. 860-875. ISSN 1460-2423

C

Carpenter, Sara C D and Mishra, Prashant and Ghoshal, Chandrika and Dash, Prasanta K and Wang, Li and Midha, Samriti and Laha, Gouri S and Lore, Jagjeet S and Kositratana, Wichai and Singh, Nagendra K and Singh, Kuldeep and Patil, Prabhu B and Oliva, Ricardo and Patarapuwadol, Sujin and Bogdanove, Adam J and Rai, Rhitu (2018) A Strain of an Emerging Indian pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene Without Inducing a Clade III Gene and Is Nearly Identical to a Recent Thai Isolate. Frontiers in microbiology, 9. p. 2703. ISSN 1664-302X

Chandel, Neha (2018) Molecular characterization of Chromosomal-Plasmid Borne Antibiotic resistance determinants in Escherichia Coli. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Chander, Atul Munish and Kochhar, Rakesh and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar and Mayilraj, Shanmugam(2018) Genome sequence and comparative genomic analysis of a clinically important strain CD11-4 of Janibacter melonis isolated from celiac disease patient. Gut Pathogens, 10 (1). ISSN 1757-4749

Chaudhary, Shilpa and Sonkusre, Praveen and Bhasin, K K and Sabherwal, Priyanka and Suri, C Raman (2018) Trace detection of some nitro-explosives using thermal mediated immunochemical defragmented method. Biosensors & bioelectronics, 126. pp. 590-595. ISSN 1873-4235

Cruite, Justin and Succo, Patrick and Raychaudhuri, Saumya and Kull, F Jon (2018) Crystal structure of an inactive variant of the quorum-sensing master regulator HapR from the protease-deficient non-O1, non-O139 Vibrio cholerae strain V2. Acta crystallographica. Section F, Structural biology communications, 74 (Pt 6). pp. 331-336. ISSN 2053-230X

D

Dar, Ahmad Showkat (2018) Development of Computational resources for siRNA Molecule based Therapeutics. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Deep, Amar and Tiwari, Prabhakar and Agarwal, Sakshi and Kaundal, Soni and Kidwai, Saqib and Singh, Ramandeep and Thakur, Krishan Gopal (2018) Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation. Nucleic acids research, 46 (21). pp. 11639-11655. ISSN 1362-4962

Dhaliwal, J and Singh, D P and Singh, S and Pinnaka, Anil Kumar and Boparai, R K and Bishnoi, M and Kondepudi, K K and Chopra, K (2018) Lactobacillus plantarum MTCC 9510 supplementation protects from chronic unpredictable and sleep deprivation-induced behaviour, biochemical and selected gut microbial aberrations in mice. Journal of applied microbiology, 125 (1). pp. 257-269. ISSN 1365-2672

Dhware , Dnyaneshwar Prashant (2018) Studies on acetoin regulatory networks in Vibrio cholerae: lesson from natural variants. PhD thesis, CSIR-IMTECH,Chandigarh/ Jawaharlal Nehru University, New Delhi.

G

Garg, Renu and Peddada, Nagesh and Dolma, Kunzes and Khatri, Neeraj and Ashish, . (2018) Pregnancy-related hormones, progesterone and human chorionic gonadotrophin, upregulate expression of maternal plasma gelsolin. American journal of physiology. Regulatory, integrative and comparative physiology, 314 (4). R509-R522. ISSN 1522-1490

Gujar, Ravindra and Sen, Pradip (2018) Transforming growth factor-β1 impairs lymph node homing of dendritic cells by downregulating C-type lectin receptor-2 expression. Cytokine, 110. pp. 39-43.

Gupta, Arpit and Puri, Anuradhika and Singh, Prashant and Sonam, Surabhi and Pandey, Richa and Sharma, Deepak (2018) The yeast stress inducible Ssa Hsp70 reduces α-synuclein toxicity by promoting its degradation through autophagy. PLoS genetics, 14 (10). e1007751. ISSN 1553-7404

Gupta, Dinesh and Mathur, Deepika and Mehta, Ayesha and Firmal, Priyanka and Bedi, Gursimran and Sood, Charu and Gautam, Ankur and Raghava, G.P.S. (2018) TopicalPdb: A database of topically delivered peptides. PLOS ONE, 13 (2). e0190134. ISSN 1932-6203

H

Haleem, Nazia (2018) Understanding solution shape of Mycobacterium tuberculosis B-Lactamase(BlaC). PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

I

Iqbal, Iram and Bajeli, Sapna and Akela, Ajit and Kumar, Ashwani (2018) Bioenergetics of Mycobacterium: An Emerging Landscape for Drug Discovery. Pathogens, 7 (1). p. 24. ISSN 2076-0817

J

Jain, Rishu and Agarwal, Mukesh Chand and Kumar, Rakesh and Sharma, Deepak and Kumar, Rajesh (2018) Effects of lyotropic anions on thermodynamic stability and dynamics of horse cytochrome c. Biophysical chemistry, 240. pp. 88-97. ISSN 1873-4200

Jangra, Manoj and Randhawa, Harmandeep Kaur and Kaur, Manpreet and Srivastava, Anugya and Maurya, Navdezda and Patil, Prashant P and Jaswal, Pallavi and Arora, Ashish and Patil, Prabhu B and Raje, Manoj and Nandanwar, Hemraj (2018) Purification, Characterization and Evaluation of Polymyxin A From : An Underexplored Member of the Polymyxin Family. Frontiers in microbiology, 9. p. 2864. ISSN 1664-302X

K

Kalra, Rashi and Bhagyaraj, Ella and Tiwari, Drishti and Nanduri, Ravikanth and Chacko, Anuja P and Jain, Monika and Mahajan, Sahil and Khatri, Neeraj and Gupta, Pawan (2018) AIRE promotes androgen-independent prostate cancer by directly regulating IL-6 and modulating tumor microenvironment. Oncogenesis, 7 (5). pp. 1-15. ISSN 2157-9024

Kaur, Amanpreet (2018) Studies on the interaction of Eis (Enhanced Intracellular Survival) protein of Mycobacterium tuberculosis with macrophage protein,DHFRL 1:Characterization of interaction and elucidation of its biological significance. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kaur, Gundeep and Kapoor, Srajan and Thakur, Krishan Gopal (2018) HelD, an RNA Polymerase Interacting Helicase, Forms Amyloid-Like Fibrils. Frontiers in microbiology, 9. p. 1934. ISSN 1664-302X

Kaur, Gundeep and Kaundal, Soni and Kapoor, Srajan and Grimes, Jonathan M and Huiskonen, Juha T and Thakur, Krishan Gopal(2018) Mycobacterium tuberculosis CarD, an essential global transcriptional regulator forms amyloid-like fibrils. Scientific reports, 8 (1). p. 10124. ISSN 2045-2322

Kaur, Gurmeet and Iyer, Lakshminarayan M and Subramanian, Srikrishna and Aravind, L (2018) Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes. Scientific reports, 8 (1). p. 6196. ISSN 2045-2322

Kaur, Gurmeet and Subramanian, Srikrishna (2018) Evolutionary relationship between the cysteine and histidine rich domains (CHORDs) and Btk-type zinc fingers. Bioinformatics. ISSN 1367-4803

Kaur, Karambir (2018) Development of computational resources and analysis for CRISR/Cas based genome editing. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kaur, Manpreet and Singh, Harjodh and Sharma, Shivani and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Sphingobacterium bovisgrunnientis sp. nov., isolated from yak milk. International Journal of Systematic and Evolutionary Microbiology, 68 (2). pp. 636-642. ISSN 1466-5026

Kaur, Navjot and Seuylemezian, Arman and Patil, Prashant P and Patil, Prabhu and Krishnamurti, Srinivasan and Varelas, Josephand Smith, David J and Mayilraj, Shanmugam and Vaishampayan, Parag (2018) Paenibacillus xerothermodurans sp. nov., an extremely dry heat resistant spore forming bacterium isolated from the soil of Cape Canaveral, Florida. International journal of systematic and evolutionary microbiology, 68 (10). pp. 3190-3196. ISSN 1466-5034

Khairnar, Aasawari (2018) Studies on Bacterial Nonulosonic Acid Transferases and F-type Lectins. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kiran, Shashi and Schumann, Peter and Busse, Hans-Jürgen and Spröer, Cathrin and Rana, Aditi and Pal, Mohinder and Korpole, Suresh and Tewari, Rupinder and Gulati, Arvind (2018) Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake.International journal of systematic and evolutionary microbiology, 68 (11). pp. 3416-3423. ISSN 1466-5034

Krishnan, Ramya and Lang, Elke and Midha, Samriti and Patil, Prabhu B and Rameshkumar, N (2018) Isolation and characterization of a novel 1-aminocyclopropane-1-carboxylate (ACC) deaminase producing plant growth promoting marine Gammaproteobacteria from crops grown in brackish environments. Proposal for Pokkaliibacter plantistimulans gen. nov., sp. nov., Balneatrichaceae fam. nov. in the order Oceanospirillales and an emended description of the genus Balneatrix. Systematic and applied microbiology, 41 (6). pp. 570-580. ISSN 1618-0984

Kumar, A and Karthikeyan, Subramanian (2018) Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis. Acta Crystallographica Section F Structural Biology Communications, 74 (3). pp. 166-173. ISSN 2053-230X

Kumar, Gaurav and Arya, Subhash B and Tuli, Amit (2018) Method for Studying the Effect of Gene Silencing on Bacterial Infection-induced ERK1/2 Signaling in Bone-marrow Derived Macrophages. Bio-protocol, 8 (24). ISSN 2331-8325

Kumar, Manoj and Rajput, Akanksha (2018) Phylogenomics and Evolutionary Perspective of Quorum Sensing Regulators (LuxI/LuxR) in Prokaryotes. In: Quorum Sensing and its Biotechnological Applications. Springer, Singapore, pp. 61-70.

Kumar, Rajesh and Kumar, Rajesh and Sharma, Deepak and Garg, Mansi and Kumar, Vinay and Agarwal, Mukesh Chand (2018)Macromolecular crowding-induced molten globule states of the alkali pH-denatured proteins. Biochimica et biophysica acta. Proteins and proteomics, 1866 (11). pp. 1102-1114. ISSN 1878-1454

Kumar, Rajesh and Sharma, Deepak and Kumar, Vinay and Kumar, Rajesh (2018) Factors defining the effects of macromolecular crowding on dynamics and thermodynamic stability of heme proteins in-vitro. Archives of biochemistry and biophysics, 654. pp. 146-162. ISSN 1096-0384

Kumar, Shekhar and Singh, Harjodh and Kaur, Manpreet and Kaur, Lakhwinder and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus shivajii sp. nov., isolated from a water sample of Sambhar salt lake, India. International journal of systematic and evolutionary microbiology, 68 (11). pp. 3463-3470. ISSN 1466-5034

Kumar, Vineet (2018) Unraveling the cross talk of metal homeostasis networks and its impact on transcription and translation machinery in Escherichia coli. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Kumar, Vinod and Agrawal, Piyush and Kumar, Rajesh and Bhalla, Sherry and Usmani, Salman Sadullah and Varshney, Grish C and Raghava, Gajendra P S (2018) Prediction of Cell-Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues. Frontiers in microbiology, 9. p. 725. ISSN 1664-302X

L

Loharch, Saurabh (2018) Targeting Sirtuins: Computational Medchem,Biochemical and Structural Biology Approach. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Lokesh, Dhanashree and Parkesh, Raman and Kammara, Rajagopal (2018) Bifidobacterium adolescentis is intrinsically resistant to antitubercular drugs. Scientific reports, 8 (1). p. 11897. ISSN 2045-2322

M

Mahajan, Sonal and Ramya, T N C (2018) F-type Lectin Domains: Provenance, Prevalence, Properties, Peculiarities, and Potential.Advances in experimental medicine and biology, 1112. pp. 345-363. ISSN 0065-2598

Mahajan, Sonal and Ramya, T N C (2018) Nature-inspired engineering of an F-type lectin for increased binding strength.Glycobiology, 28 (12). pp. 933-948. ISSN 1460-2423

Maheshwari, Anand (2018) In Vitro and In Vivo studies of third generation clot busters. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University,New Delhi.

Mahor, Durga and Prasad, Gandham S (2018) Biochemical Characterization of Adenine Deaminase and Guanine Deaminase and Their Potential Application in Lowering Purine Content in Beer. Frontiers in bioengineering and biotechnology, 6. p. 180. ISSN 2296-4185

Mathur, Deepika and Singh, Sandeep and Mehta, Ayesha and Agrawal, Piyush and Raghava, G.P.S. (2018) In silico approaches for predicting the half-life of natural and modified peptides in blood. PloS one, 13 (6). e0196829. ISSN 1932-6203

Maurya, Sudeep K (2018) Boosting the efficacy of Bacillus Calmette-Guerin (BCG) for protection against Mycobacterium tuberculosis.PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Michelet, Xavier and Tuli, Amit and Gan, Huixian and Geadas, Carolina and Sharma, Mahak and Remold, Heinz G and Brenner, Michael B (2018) Lysosome-Mediated Plasma Membrane Repair Is Dependent on the Small GTPase Arl8b and Determines Cell Death Type in Infection. Journal of immunology (Baltimore, Md. : 1950), 200 (9). pp. 3160-3169. ISSN 1550-6606

Muddassir, Mohd and Manna, Bharat and Singh, Priyanka and Singh, Surjeet and Kumar, Rajesh and Ghosh, Amit and Sharma, Deepak (2018) Single-molecule force-unfolding of titin I27 reveals a correlation between the size of the surrounding anions and its mechanical stability. Chemical communications (Cambridge, England), 54 (69). pp. 9635-9638. ISSN 1364-548X

Muthu Krishnan, S. (2018) Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains. Journal of Theoretical Biology, 445. pp. 62-74. ISSN 00225193

N

Nadeem, Sajid (2018) Influence of Gut Microbiota on the efficacy of vaccines against Mycobacterium tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Nag, Dhrubajyoti and Breen, Paul and Raychaudhuri, Saumya and Withey, Jeffrey H (2018) Glucose metabolism by inhibits intestinal colonization of zebrafish. Infection and immunity. ISSN 1098-5522

Nagar, Jyoti (2018) Understanding shape profiles of Urea induced unfolded states of multidomain protein gelsolin. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Nagpal, Gandharva and Chaudhary, Kumardeep and Agrawal, Piyush and Raghava, G.P.S. (2018) Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants. Journal of translational medicine, 16 (1). p. 181. ISSN 1479-5876

Navdezda, . (2018) ESBL study in Drug-Resistant Gram Negative Bacteria and Isolation of Bioactive Molecules from Microbial Source to Combat Multi-Drug Resistance. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Negi, Shikha (2018) Crosstalk between Gut Microbiota and Host Immune System in Tuberculosis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

P

Pahari, Susanta and Kaur, Gurpreet and Negi, Shikha and Aqdas, Mohammad and Das, Deepjyoti K. and Bashir, Hilal and Singh, Sanpreet and Nagare, Mukta and Khan, Junaid and Agrewala, J N (2018) Reinforcing the Functionality of Mononuclear Phagocyte System to Control Tuberculosis. Frontiers in Immunology, 9. ISSN 1664-3224

Pal, Deepika and Bhardwaj, Ayanka and Kaur, Navjot and Sudan, Sarabjeet Kour and Bisht, Bhawana and Kumari, Munesh and Vyas, Bhawna and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Fictibacillus aquaticus sp. nov., isolated from downstream river water. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 160-164. ISSN 1466-5026

Pal, Deepika and Bhardwaj, Ayanka and Sudan, Sarabjeet Kour and Kaur, Navjot and Kumari, Munesh and Bisht, Bhawana and Vyas, Bhawna and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Thauera propionica sp. nov., isolated from downstream sediment sample of the river Ganges, Kanpur, India. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 341-346. ISSN 1466-5026

Pal, Deepika and Kaur, Navjot and Sudan, Sarabjeet Kour and Bisht, Bhawana and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2018) Acidovorax kalamii sp. nov., isolated from a water sample of the river Ganges. International journal of systematic and evolutionary microbiology, 68 (5). pp. 1719-1724. ISSN 1466-5034

Passi, Anurag (2018) Drug Repurposing for Tuberculosis using Network Pharmacology and Pharmacogenomics. PhD thesis, ACSIR-IMTECH, Chandigarh.

Passi, Anurag and Rajput, Neeraj Kumar and Wild, David J and Bhardwaj, Anshu (2018) RepTB: a gene ontology based drug repurposing approach for tuberculosis. Journal of cheminformatics, 10 (1). p. 24. ISSN 1758-2946

Pathania, Preeti Kumari and Saini, Jai Kumar and Vij, Shania and Tewari, Rupinder and Sabherwal, Priyanka and Rishi, Praveen and Suri, C Raman (2018) Aptamer functionalized MoS-rGO nanocomposite based biosensor for the detection of Vi antigen. Biosensors & bioelectronics, 122. pp. 121-126. ISSN 1873-4235

Patil, Prashant P and Kumar, Sanjeet and Midha, Samriti and Gautam, Vikas and Patil, Prabhu B (2018) Taxonogenomics reveal multiple novel genomospecies associated with clinical isolates of Stenotrophomonas maltophilia. Microbial genomics, 4 (8). ISSN 2057-5858

Q

Qureshi, Abid and Rajput, Akanksha and Kaur, Gazaldeep and Kumar, Manoj (2018) HIVprotI: an integrated web based platform for prediction and design of HIV proteins inhibitors. Journal of Cheminformatics, 10 (1). ISSN 1758-2946

R

Rai, Pradeep K and Chodisetti, Sathi Babu and Maurya, Sudeep K and Nadeem, Sajid and Zeng, Weiguang and Janmeja, Ashok Kand Jackson, David C and Agrewala, J N (2018) A lipidated bi-epitope vaccine comprising of MHC-I and MHC-II binder peptides elicits protective CD4 T cell and CD8 T cell immunity against Mycobacterium tuberculosis. Journal of translational medicine, 16 (1). p. 279. ISSN 1479-5876

Rajput, Akanksha and Kumar, Manoj (2018) Anti-biofilm Peptides: A New Class of Quorum Quenchers and Their Prospective Therapeutic Applications. In: Biotechnological Applications of Quorum Sensing Inhibitors. Springer, Singapore, pp. 87-110.

Rajput, Akanksha and Kumar, Manoj (2018) Anti-flavi: A Web Platform to Predict Inhibitors of Using QSAR and Peptidomimetic Approaches. Frontiers in microbiology, 9. p. 3121. ISSN 1664-302X

Rajput, Akanksha and Thakur, Anamika and Sharma, Shivangi and Kumar, Manoj (2018) aBiofilm: a resource of anti-biofilm agents and their potential implications in targeting antibiotic drug resistance. Nucleic Acids Research, 46 (D1). D894-D900. ISSN 0305-1048

S

Saini, Ankita and Mahajan, Sahil and Ahuja, Nancy and Bhagyaraj, Ella and Kalra, Rashi and Janmeja, Ashok Kumar and Gupta, Pawan (2018) An Accord of Nuclear Receptor Expression in M. tuberculosis Infected Macrophages and Dendritic Cells. Scientific Reports, 8 (1). ISSN 2045-2322

Sajid, Mohammad and Agrewala, J N (2018) Low prevalence of anti-xenobiotic antibodies among the occupationally exposed individuals is associated with a high risk of cancer. Cancer medicine, 8 (1). pp. 246-260. ISSN 2045-7634

Sharma, G. and Khatri, Indu and Subramanian, Srikrishna (2018) Comparative Genomics of Myxobacterial Chemosensory Systems.Journal of bacteriology, 200 (3). ISSN 1098-5530

Sharma, S and Ramya, T N C (2018) Saccharide binding by intelectins. International journal of biological macromolecules, 108. pp. 1010-1016. ISSN 1879-0003

Sharma, Shikha (2018) Phylogenomics Based Comparative studies on Host Adaptive bacteria. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Sharma, Shikha and Chaudhry, Vasvi and Kumar, Sanjeet and Patil, Prabhu B (2018) Phylogenomic Based Comparative Studies on Indian and American CommensalIsolates. Frontiers in microbiology, 9. p. 333. ISSN 1664-302X

Shikha, Sristy (2018) Studies on Biomolecules Immobilized to Nanoparticles for Bio-Applications. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Showkat, Ahmad and Kumar, Manoj (2018) saRNAdb: Resource of Small Activating RNAs for Up-regulating the Gene Expression.Journal of molecular biology, 430 (15). pp. 2212-2218. ISSN 1089-8638

Singh, Bharat Bhushan (2018) Studies on the functions of GacA/GacS two component system in antimicrobial resistance in Acinetobacter baumannii. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Singh, Harjodh and Kaur, Manpreet and Kaur, Lakhwinder and Sharma, Shivani and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus lacus sp. nov., isolated from a water sample of a salt lake in India. International Journal of Systematic and Evolutionary Microbiology, 68 (3). pp. 801-809. ISSN 1466-5026

Singh, Harjodh and Kaur, Manpreet and Sharma, Shivani and Kaur, Lakhwinder and Mishra, Sunita and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2018) Bacillus alkalilacus sp. nov., isolated from a sediment sample from a lake in India.International journal of systematic and evolutionary microbiology, 68 (5). pp. 1665-1671. ISSN 1466-5034

Singh, Nisha and Ahmad, Zeeshan and Baid, Navin and Kumar, Ashwani (2018) Host heme oxygenase-1: Friend or foe in tackling pathogens? IUBMB life, 70 (9). pp. 869-880. ISSN 1521-6551

Singh, Nisha and Kansal, Pallavi and Ahmad, Zeeshan and Baid, Navin and Kushwaha, Hariom and Khatri, Neeraj and Kumar, Ashwani (2018) Antimycobacterial effect of IFNG (interferon gamma)-induced autophagy depends on HMOX1 (heme oxygenase 1)-mediated increase in intracellular calcium levels and modulation of PPP3/calcineurin-TFEB (transcription factor EB) axis. Autophagy, 14 (6). pp. 972-991. ISSN 1554-8635

Singh, Pargat and Gupta, Ritika and Choudhury, Megha and Pinnaka, Anil Kumar and Kumar, Rajesh and Bhalla, Vijayender (2018)Drug and nanoparticle-mediated rapid naked eye water test for pathogens detection. Sensors and Actuators B: Chemical, 262 (1). pp. 603-610.

Singh, Suruchi and Sevalkar, Ritesh Rajesh and Sarkar, Dibyendu and Karthikeyan, Subramanian (2018) Characteristics of the essential pathogenicity factor Rv1828, a MerR family transcription regulator from Mycobacterium tuberculosis. The FEBS journal, 285 (23). pp. 4424-4444. ISSN 1742-4658

Solanki, Vipul and Kapoor, Srajan and Thakur, Krishan Gopal (2018) Structural insights into the mechanism of Type IVa pilus extension and retraction ATPase motors. The FEBS journal, 285 (18). pp. 3402-3421. ISSN 1742-4658

Solanki, Vipul Ambalal (2018) To understand the molecular basis for extracellular electron transfer in Geobacter species. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Srinivasan, Vijaya Bharathi and Angrasan, Mahavinod and Chandel, Neha and Rajamohan, Govindan (2018) Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance. Functional & integrative genomics, 18 (4). pp. 477-487. ISSN 1438-7948

Srinivasan, Vijaya Bharathi and Rajamohan, Govindan (2018) Genome analysis of urease positive Serratia marcescens, co-producing SRT-2 and AAC(6')-Ic with multidrug efflux pumps for antimicrobial resistance. Genomics. ISSN 1089-8646 (In Press)

Srivastava, Ankit and Singh, Jasdeep and Singh Yadav, Shiv Pratap and Arya, Prabha and Kalim, Fouzia and Rose, Pooja and Ashish, . and Kundu, Bishwajit (2018) The Gelsolin Pathogenic D187N Mutant Exhibits Altered Conformational Stability and Forms Amyloidogenic Oligomers. Biochemistry, 57 (16). pp. 2359-2372. ISSN 1520-4995

Srivastava, Ritika and Kaur, Amanpreet and Sharma, Charu and Karthikeyan, Subramanian (2018) Structural characterization of ribT from Bacillus subtilis reveals it as a GCN5-related N-acetyltransferase. Journal of Structural Biology, 202 (1). pp. 70-81. ISSN 10478477

Sudan, Sarabjeet Kour (2018) Bioprospecting of industrially important enzymes from complex microbial communities by cultivation-dependent and-independent approaches. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Sudan, Sarabjeet Kour and Kumar, Narender and Kaur, Ishwinder and Sahni, Girish (2018) Production, purification and characterization of raw starch hydrolyzing thermostable acidic α-amylase from hot springs, India. International journal of biological macromolecules, 117. pp. 831-839. ISSN 1879-0003

Sudan, Sarabjeet Kour and Pal, Deepika and Bisht, Bhawana and Kumar, Narender and Chaudhry, Vasvi and Patil, Prabhu and Sahni, Girish and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2018) Pseudomonas fluvialis sp. nov., a novel member of the genus Pseudomonas isolated from the river Ganges, India. International Journal of Systematic and Evolutionary Microbiology, 68 (1). pp. 402-408. ISSN 1466-5026

T

Thakur, Naveen and Kumar, Ashwani and Dikshit, Kanak L (2018) Type II flavohemoglobin of Mycobacterium smegmatis oxidizes d-lactate and mediate electron transfer. International journal of biological macromolecules, 112. pp. 868-875. ISSN 1879-0003

Tomar, Rajul (2018) Studies on Novel Uricases of the Yeast Kluyveromyces Lactis. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Tuli, Amit and Sharma, Mahak (2018) How to do business with lysosomes: Salmonella leads the way. Current opinion in microbiology, 47. pp. 1-7. ISSN 1879-0364

U

Usmani, Salman Sadullah and Bhalla, Sherry and Raghava, G.P.S. (2018) Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features. Frontiers in pharmacology, 9. p. 954. ISSN 1663-9812

Usmani, Salman Sadullah and Kumar, Rajesh and Bhalla, Sherry and Kumar, Vinod and Raghava, G.P.S. (2018) In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs. Advances in protein chemistry and structural biology, 112. pp. 221-263. ISSN 1876-1631

Usmani, Salman Sadullah and Kumar, Rajesh and Kumar, Vinod and Singh, Sandeep and Raghava, G.P.S. (2018) AntiTbPdb: a knowledgebase of anti-tubercular peptides. Database : the journal of biological databases and curation, 2018. ISSN 1758-0463

V

Vaid, Bhavna (2018) Synthesis and Evaluation of 2,2'-Bipyridine Derivatives for Therapeutic Applications. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Vasanth, Vaidyanathan (2018) Studies on the role of two component system in mediating antimicrobial resistance in Acinetobacter Baumannii. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Verma, Ashish (2018) Study of Prokaryotic Diversity from Marine Habitats of the Central west Coast of India. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

Vidyarthi, Aurobind and Khan, Nargis and Agnihotri, Tapan and Negi, Shikha and Das, Deepjyoti K and Aqdas, Mohammad and Chatterjee, Deepyan and Colegio, Oscar R and Tewari, Manoj K and Agrewala, J N (2018) TLR-3 Stimulation Skews M2 Macrophages to M1 Through IFN-αβ Signaling and Restricts Tumor Progression. Frontiers in immunology, 9. p. 1650. ISSN 1664-3224

Y

Yadav, Punam and Maharjan, Jyoti and Korpole, Suresh and Prasad, Gandham S and Sahni, Girish and Bhattarai, Tribikram and Sreerama, Lakshmaiah (2018) Production, Purification, and Characterization of Thermostable Alkaline Xylanase From NASTPD13.Frontiers in bioengineering and biotechnology, 6. p. 65. ISSN 2296-4185

Yadav, Shiv Pratap Singh (2018) Understanding shape and functional aspects of aptamers capable of binding recombinant human gelsolin and its variants. PhD thesis, CSIR-IMTECH,Chandigarh/Jawaharlal Nehru University, New Delhi.

A

Ahmed, Niyaz and Pahil, Sapna and Taneja, Neelam and Ansari, Hifzur Rahman and Raghava, G.P.S. (2017) In silico analysis to identify vaccine candidates common to multiple serotypes of Shigella and evaluation of their immunogenicity. PLOS ONE, 12 (8). e0180505. ISSN 1932-6203

Alfatah, Md. and Bari, Vinay K. and Nahar, Anubhav S. and Bijlani, Swati and Ganesan, K. (2017) Critical role for CaFEN1 and CaFEN12 of Candida albicans in cell wall integrity and biofilm formation. Scientific Reports, 7. ISSN 2045-2322

Amir, Mohammed and Aqdas, Mohammad and Nadeem, Sajid and Siddiqui, Kaneez F. and Khan, Nargis and Sheikh, Javaid A. and Agrewala, J N (2017) Diametric Role of the Latency-Associated Protein Acr1 of Mycobacterium tuberculosis in Modulating the Functionality of Pre- and Post-maturational Stages of Dendritic Cells. Frontiers in Immunology, 8. ISSN 1664-3224

B

Badmalia, Maulik D. and Singh, Shikha and Garg, Renu and Ashish, . (2017) Visualizing Temperature Mediated Activation of Gelsolin and Its Deactivation By Pip2: A Saxs Based Study. Scientific Reports, 7 (1). ISSN 2045-2322

Baindara, Piyush and Gautam, Ankur and Raghava, G.P.S. and Korpole, Suresh (2017) Anticancer properties of a defensin like class IId bacteriocin Laterosporulin10. Scientific Reports, 7. p. 46541. ISSN 2045-2322

Baindara, Piyush and Kapoor, Anoop and Korpole, Suresh and Grover, Vishakha (2017) Cysteine-rich low molecular weight antimicrobial peptides from Brevibacillus and related genera for biotechnological applications. World Journal of Microbiology and Biotechnology, 33 (6). ISSN 0959-3993

Bankapalli, Leela Krishna and Mishra, Rahul C. and Raychaudhuri, Saumya (2017) VopE, a Vibrio cholerae Type III Effector, Attenuates the Activation of CWI-MAPK Pathway in Yeast Model System. Frontiers in Cellular and Infection Microbiology, 7. ISSN 2235-2988

Bansal, Kanika and Midha, Samriti and Kumar, Sanjeet and Patil, Prabhu B. and Elliot, Marie A. (2017) Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity. Applied and Environmental Microbiology, 83 (9). e02993-16. ISSN 0099-2240

Bansal, Roohi and Anil Kumar, Vijjamarri and Sevalkar, Ritesh Rajesh and Singh, Prabhat Ranjan and Sarkar, Dibyendu (2017)Mycobacterium tuberculosis virulence-regulator PhoP interacts with alternative sigma factor SigE during acid-stress response.Molecular Microbiology, 104 (3). pp. 400-411. ISSN 0950382X

Bhalla, Sherry and Chaudhary, Kumardeep and Kumar, Ritesh and Sehgal, Manika and Kaur, Harpreet and Sharma, Suresh and Raghava, G.P.S. (2017) Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer. Scientific Reports, 7. ISSN 2045-2322

Bhalla, Sherry and Verma, Ruchi and Kaur, Harpreet and Kumar, Rajesh and Usmani, Salman Sadullah and Sharma, Suresh and Raghava, G.P.S. (2017) CancerPDF: A repository of cancer-associated peptidome found in human biofluids. Scientific Reports, 7 (1). ISSN 2045-2322

Bhat, Aadil H. and Pathak, Deepika and Rao, Alka (2017) The alr-groEL1 operon in Mycobacterium tuberculosis: an interplay of multiple regulatory elements. Scientific Reports, 7. ISSN 2045-2322

Bijlani, Swati and Nahar, Anubhav S. and Ganesan, K. (2017) Improved Tet-On and Tet-Off systems for tetracycline-regulated expression of genes in Candida. Current Genetics, 64 (1). pp. 303-316. ISSN 0172-8083

C

Chander, Atul M. and Nair, Ramesan G. and Kaur, Gurwinder and Kochhar, Rakesh and Dhawan, Devinder K. and Bhadada, Sanjay K. and Mayilraj, Shanmugam (2017) Genome Insight and Comparative Pathogenomic Analysis of Nesterenkonia jeotgali Strain CD08_7 Isolated from Duodenal Mucosa of Celiac Disease Patient. Frontiers in Microbiology, 8. ISSN 1664-302X

Chander, Atul Munish and Kumari, Munesh and Kochhar, Rakesh and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar and Mayilraj, Shanmugam (2017) Genome Sequence of Kocuria polaris Strain CD08_4, an Isolate from the Duodenal Mucosa of a Celiac Disease Patient. Genome Announcements, 5 (43). e01158-17. ISSN 2169-8287

Chaudhry, Vasvi and Sharma, Shikha and Bansal, Kanika and Patil, Prabhu B. (2017) Glimpse into the Genomes of Rice Endophytic Bacteria: Diversity and Distribution of Firmicutes. Frontiers in Microbiology, 7. ISSN 1664-302X

Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Patidar, Anil and Dhiman, Asmita and Sheokand, Navdeepand Malhotra, Himanshu and Raje, Chaaya Iyengar and Raje, Manoj (2017) Moonlighting glycolytic protein glyceraldehyde-3-phosphate dehydrogenase (GAPDH): an evolutionarily conserved plasminogen receptor on mammalian cells. The FASEB Journal, 31 (6). pp. 2638-2648. ISSN 0892-6638

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Deep, Amar and Kaundal, Soni and Agarwal, Sakshi and Singh, Ramandeep and Thakur, Krishan Gopal (2017) Crystal structure of Mycobacterium tuberculosis VapC20 toxin and its interactions with cognate antitoxin, VapB20, suggest a model for toxin-antitoxin assembly. The FEBS Journal, 284 (23). pp. 4066-4082. ISSN 1742464X

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Ghosh, Suparna and Dureja, Chetna and Khatri, Indu and Subramanian,Srikrishna and Raychaudhuri, Saumya and Ghosh, Sagarmoy (2017) Identification of novel small RNAs in Burkholderia cenocepacia KC-01 expressed under iron limitation and oxidative stress conditions. Microbiology, 163 (12). pp. 1924-1936. ISSN 1350-0872

Gupta, Garima and Agarwal, Uday and Kaur, Harneet and Kumar, Neelima R and Gupta, Pawan (2017) Aphicidal effects of terpenoids present in Citrus limon on Macrosiphum roseiformis and two generalist insect predators. Journal of Asia-Pacific Entomology, 20 (4). pp. 1087-1095.

Gupta, Vasundhera and Singh, Pradip Kumar and Korpole, Suresh and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar(2017) Bacillus mangrovi sp. nov., isolated from a sediment sample from a mangrove forest. International Journal of Systematic and Evolutionary Microbiology, 67 (7). pp. 2219-2224. ISSN 1466-5026

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Hade, Mangesh Dattu and Kaur, Jagdeep and Chakraborti, Pradip K. and Dikshit, Kanak L. (2017) Multidomain truncated hemoglobins: New members of the globin family exhibiting tandem repeats of globin units and domain fusion. IUBMB Life, 69 (7). pp. 479-488. ISSN 15216543

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Kachhap, Sangita and Priyadarshini, Pragya and Singh, Balvinder (2017) Molecular dynamics simulations show altered secondary structure of clawless in binary complex with DNA providing insights into aristaless-clawless-DNA ternary complex formation. Journal of Biomolecular Structure and Dynamics, 35 (6). pp. 1153-1167. ISSN 0739-1102

Kaur, G. and Subramanian, Srikrishna (2017) Evolutionary analysis of a novel zinc ribbon in the N-terminal region of threonine synthase. Cell Cycle, 16 (20). pp. 1918-1926. ISSN 1538-4101

Kaur, Gursharan and Kumar, Vineet and Arora, Amit and Tomar, Ajay and Ashish, . and Sur, Runa and Dutta, Dipak (2017) Affected energy metabolism under manganese stress governs cellular toxicity. Scientific Reports, 7. ISSN 2045-2322

Kaur, Manpreet and Singh, Harjodh and Jangra, Manoj and Kaur, Lakhwinder and Jaswal, Pallavi and Dureja, Chetna and Nandanwar, Hemraj and Chaudhuri, Saumya Ray and Raje, Manoj and Mishra, Sunita and Pinnaka, Anil Kumar (2017) Lactic acid bacteria isolated from yak milk show probiotic potential. Applied Microbiology and Biotechnology, 101 (20). pp. 7635-7652. ISSN 0175-7598

Kaushik, Abhishek and Ekka, Mary Krishna and Kumaran, Sangaralingam (2017) Two Distinct Assembly States of the Cysteine Regulatory Complex of Salmonella typhimurium Are Regulated by Enzyme–Substrate Cognate Pairs. Biochemistry, 56 (18). pp. 2385-2399. ISSN 0006-2960

Khatri, Indu and Tomar, Rajul and Ganesan, K. and Prasad, G. S. and Subramanian, Srikrishna (2017) Complete genome sequence and comparative genomics of the probiotic yeast Saccharomyces boulardii. Scientific Reports, 7. ISSN 2045-2322

Kiran, Shashi and Swarnkar, Mohit Kumar and Mayilraj, Shanmugam and Tewari, Rupinder and Gulati, Arvind (2017) Paenibacillus ihbetae sp. nov., a cold-adapted antimicrobial producing bacterium isolated from high altitude Suraj Tal Lake in the Indian trans-Himalayas. Systematic and Applied Microbiology, 40 (7). pp. 430-439. ISSN 07232020

Krishnan, Ramya and Menon, Rahul R. and Likhitha, . and Busse, Hans-Jürgen and Tanaka, Naoto and Krishnamurthi, Srinivasanand Rameshkumar, N. (2017) Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Research in Microbiology, 168 (2). pp. 113-121. ISSN 09232508

Kujur, Weshely and Gurram, Rama Krishna and Maurya, Sudeep K. and Nadeem, Sajid and Chodisetti, Sathi Babu and Khan, Nargisand Agrewala, J N (2017) Caerulomycin A suppresses the differentiation of naïve T cells and alleviates the symptoms of experimental autoimmune encephalomyelitis. Autoimmunity, 50 (5). pp. 317-328. ISSN 0891-6934

Kumar, R. and Pinnaka, Anil Kumar and Krishnan, Beena (2017) TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI. Extremophiles, 21 (3). pp. 523-535. ISSN 1431-0651

Kumar, Shailesh and Sharma, Deepak and Kumar, Rajesh (2017) Role of Macromolecular Crowding on Stability and Iron Release Kinetics of Serum Transferrin. The Journal of Physical Chemistry B, 121 (37). pp. 8669-8683. ISSN 1520-6106

Kumar, Vineet and Mishra, Rajesh Kumar and Kaur, Gursharan and Dutta, Dipak (2017) Cobalt and nickel impair DNA metabolism by the oxidative stress independent pathway. Metallomics, 9 (11). pp. 1596-1609. ISSN 1756-5901

Kumar R, Manthan and Kaur, Navjot and Kumar, N and Kaur, G and Singh, N K and Krishnamurthi, S and Mayilraj, S. (2017) Bacillus maritimus sp. nov., a novel member of the genus Bacillus isolated from marine sediment. International Journal of Systematic and Evolutionary Microbiology, 67 (1). pp. 60-66. ISSN 1466-5026

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Mahajan, Sonal and Khairnar, Aasawari and Bishnoi, Ritika and Ramya, T.N.C. (2017) Microbial F-type lectin domains with affinity for blood group antigens. Biochemical and Biophysical Research Communications, 491 (3). pp. 708-713. ISSN 0006291X

Malhotra, Himanshu and Patidar, Anil and Boradia, Vishant M. and Kumar, Rajender and Nimbalkar, Rakesh D. and Kumar, Ajay and Gani, Zahid and Kaur, Rajbeer and Garg, Prabha and Raje, Manoj and Raje, Chaaya I. (2017) Mycobacterium tuberculosis Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Functions as a Receptor for Human Lactoferrin. Frontiers in Cellular and Infection Microbiology, 7. ISSN 2235-2988

Malhotra, Neha and Karthikeyan, Subramanian and Chakraborti, Pradip K. (2017) Phosphorylation of mycobacterial phosphodiesterase by eukaryotic-type Ser/Thr kinase controls its two distinct and mutually exclusive functionalities. Journal of Biological Chemistry, 292 (42). pp. 17362-17374. ISSN 0021-9258

Marwaha, Rituraj and Arya, Subhash B. and Jagga, Divya and Kaur, Harmeet and Tuli, Amit and Sharma, Mahak (2017) The Rab7 effector PLEKHM1 binds Arl8b to promote cargo traffic to lysosomes. The Journal of Cell Biology, 216 (4). pp. 1051-1070. ISSN 0021-9525

Midha, Samriti and Bansal, Kanika and Kumar, Sanjeet and Girija, Anil Madhusoodana and Mishra, Deo and Brahma, Kranthi and Laha, Gouri Sankar and Sundaram, Raman Meenakshi and Sonti, Ramesh V. and Patil, Prabhu B. (2017) Population genomic insights into variation and evolution of Xanthomonas oryzae pv. oryzae. Scientific Reports, 7. p. 40694. ISSN 2045-2322

Mittal, Monica and Singh, Appu Kumar and Kumaran, S. (2017) Structural and biochemical characterization of ligand recognition by CysB, the master regulator of sulfate metabolism. Biochimie, 142. pp. 112-124. ISSN 03009084

Monga, Isha and Qureshi, Abid and Thakur, Nishant and Gupta, Amit Kumar and Kumar, Manoj (2017) ASPsiRNA: A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy. G3 (Bethesda, Md.), 7 (9). pp. 2931-2943. ISSN 2160-1836

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Nagar, R and Rao, Alka (2017) An iterative glycosyltransferase EntS catalyzes transfer and extension of O- and S-linked monosaccharide in enterocin 96. Glycobiology, 27 (8). pp. 766-776. ISSN 0959-6658

Nagpal, Gandharva and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2017) Computational Prediction of the Immunomodulatory Potential of RNA Sequences. Methods Molecular Biology, 1632. pp. 75-90. ISSN 1064-3745

Nagpal, Gandharva and Usmani, Salman Sadullah and Dhanda, Sandeep Kumar and Kaur, Harpreet and Singh, Sandeep and Sharma, Meenu and Raghava, G.P.S. (2017) Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential. Scientific Reports, 7. p. 42851. ISSN 2045-2322

Nupur, Nupur and Saini, Mohit Kumar and Singh, Pradeep Kumar and Korpole, Suresh and Srinivas Tanuku, Naga Radha and Takaichi, Shinichi and Pinnaka, Anil Kumar (2017) Imhoffiella gen. nov., a marine phototrophic member of the family Chromatiaceae including the description of Imhoffiella purpurea sp. nov. and the reclassification of Thiorhodococcus bheemlicus Anil Kumar et al. 2007 as Imhoffiella bheemlica comb. nov. International Journal of Systematic and Evolutionary Microbiology, 67 (6). pp. 1949-1956. ISSN 1466-5026

O

Ojha, Anup Kumar and Verma, Ashish and Pal, Yash and Bhatt, Deepak and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan(2017) Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. International Journal of Systematic and Evolutionary Microbiology, 67 (8). pp. 2746-2751. ISSN 1466-5026

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Pahari, Susanta and Chatterjee, Deepyan and Negi, Shikha and Kaur, Jagdeep and Singh, Balvinder and Agrewala, J N (2017)Morbid Sequences Suggest Molecular Mimicry between Microbial Peptides and Self-Antigens: A Possibility of Inciting Autoimmunity.Frontiers in Microbiology, 8. ISSN 1664-302X

Pahari, Susanta and Kaur, Gurpreet and Aqdas, Mohammad and Negi, Shikha and Chatterjee, Deepyan and Bashir, Hilal and Singh, Sanpreet and Agrewala, J N (2017) Bolstering Immunity through Pattern Recognition Receptors: A Unique Approach to Control Tuberculosis. Frontiers in Immunology, 8. ISSN 1664-3224

Pal, Deepika and Mathan Kumar, Rajendran and Kaur, Navjot and Kumar, Narender and Kaur, Gurwinder and Singh, Nitin Kumar and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2017) Bacillus maritimus sp. nov., a novel member of the genus Bacillus isolated from marine sediment. International journal of systematic and evolutionary microbiology, 67 (1). pp. 60-66. ISSN 1466-5034

Pathaniya, Preeti and Sharma, Anurima and Kumar, Binod and Rishi, Praveen and Suri, C Raman (2017) Selective identification of specific aptamers for the detection of non-typhoidal salmonellosis in an apta-impedimetric sensing format. Mcrichimica Acta, 184 (5). pp. 1499-1508.

Patil, Prashant P. and Mali, Swapna and Midha, Samriti and Gautam, Vikas and Dash, Lona and Kumar, Sunil and Shastri, Jayanthiand Singhal, Lipika and Patil, Prabhu B. (2017) Genomics Reveals a Unique Clone of Burkholderia cenocepacia Harboring an Actively Excising Novel Genomic Island. Frontiers in Microbiology, 8. ISSN 1664-302X

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Rai, Pradeep K. and Chodisetti, Sathi Babu and Zeng, Weiguang and Nadeem, Sajid and Maurya, Sudeep K. and Pahari, Susantaand Janmeja, Ashok K. and Jackson, David C. and Agrewala, J N (2017) A lipidated peptide of Mycobacterium tuberculosis resuscitates the protective efficacy of BCG vaccine by evoking memory T cell immunity. Journal of Translational Medicine, 15 (1). ISSN 1479-5876

Rajput, Akanksha and Kumar, Manoj (2017) Computational Exploration of Putative LuxR Solos in Archaea and Their Functional Implications in Quorum Sensing. Frontiers in Microbiology, 8. ISSN 1664-302X

Rajput, Akanksha and Kumar, Manoj (2017) In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria. Scientific Reports, 7 (1). ISSN 2045-2322

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S. Yadav, Ghanshyam and K. Ravala, Sandeep and Kachhap, Sangita and Thakur, Meghna and Roy, Abhishek and Singh, Balvinderand Karthikeyan, Subramanian and K. Chakraborti, Pradip (2017) Eukaryotic-type serine/threonine kinase mediated phosphorylation at Thr 169 perturbs mycobacterial guanylate kinase activity. Bioscience Reports, 37 (6). BSR20171048. ISSN 0144-8463

Sagar, Amin and Arif, Ehtesham and Solanki, Ashish Kumar and Srivastava, Pankaj and Janech, Michael G. and Kim, Seok-Hyungand Lipschutz, Joshua H. and Kwon, Sang-Ho and Ashish, . and Nihalani, Deepak (2017) Targeting Neph1 and ZO-1 protein-protein interaction in podocytes prevents podocyte injury and preserves glomerular filtration function. Scientific Reports, 7. ISSN 2045-2322

Sagar, Amin and Haleem, Nazia and Bashir, Yaawar Mir and Ashish, . (2017) Search for non-lactam inhibitors of mtb β-lactamase led to its open shape in apo state: new concept for antibiotic design. Scientific Reports, 7 (1). ISSN 2045-2322

Sang, Qing-Xiang Amy and Usmani, Salman Sadullah and Bedi, Gursimran and Samuel, Jesse S. and Singh, Sandeep and Kalra, Sourav and Kumar, Pawan and Ahuja, Anjuman Arora and Sharma, Meenu and Gautam, Ankur and Raghava, G.P.S. (2017) THPdb: Database of FDA-approved peptide and protein therapeutics. PLOS ONE, 12 (7). e0181748. ISSN 1932-6203

Sengupta, Chirantana and Ekka, Manjula and Arora, Saurabh and Dhaware, Prashant D and Chowdhury, Rukhsana and Raychaudhuri, Saumya (2017) Cross feeding of glucose metabolism byproducts of human gut isolates and probiotic strains affect survival of Vibrio cholerae. Gut pathogens, 9. p. 3. ISSN 1757-4749

Sengupta, Chirantana and Ekka, Manjula and Arora, Saurabh and Dhaware, Prashant D. and Chowdhury, Rukhsana and Raychaudhuri, Saumya (2017) Cross feeding of glucose metabolism byproducts of Escherichia coli human gut isolates and probiotic strains affect survival of Vibrio cholerae. Gut Pathogens, 9 (3). ISSN 1757-4749

Sharma, G. and Subramanian, Srikrishna (2017) Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. Genome Biology and Evolution, 9 (5). pp. 1304-1311. ISSN 1759-6653

Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2017) Comparative Genomics of Myxobacterial Chemosensory Systems. Journal of Bacteriology, 200 (3). e00620-17. ISSN 0021-9193

Shinde, R N and Karthikeyan, Subramanian and Singh, Balvinder (2017) Molecular dynamics studies unravel role of conserved residues responsible for movement of ions into active site of DHBPS. Scientific Reports, 7. p. 40452. ISSN 2045-2322

Sidhu, Chandni and Thakur, Suresh and Sharma, Gunjan and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2017)Oceanospirillum sanctuarii sp. nov., isolated from a sediment sample. International Journal of Systematic and Evolutionary Microbiology, 67 (9). pp. 3428-3434. ISSN 1466-5026

Sidhu, Chandni and Vikram, Surendra and Pinnaka, Anil Kumar (2017) Unraveling the Microbial Interactions and Metabolic Potentials in Pre- and Post-treated Sludge from a Wastewater Treatment Plant Using Metagenomic Studies. Frontiers in Microbiology, 8. ISSN 1664-302X

Sindhwani, Aastha and Arya, Subhash B. and Kaur, Harmeet and Jagga, Divya and Tuli, Amit and Sharma, Mahak (2017) Salmonella exploits the host endolysosomal tethering factor HOPS complex to promote its intravacuolar replication. PLOS Pathogens, 13 (10). e1006700. ISSN 1553-7374

Singh, Appu Kumar and Ekka, Mary Krishna and Kaushik, Abhishek and Pandya, Vaibhav and Singh, Ravi P. and Banerjee, Shrijitaand Mittal, Monica and Singh, Vijay and Kumaran, S. (2017) Substrate-Induced Facilitated Dissociation of the Competitive Inhibitor from the Active Site of O-Acetyl Serine Sulfhydrylase Reveals a Competitive-Allostery Mechanism. Biochemistry, 56 (37). pp. 5011-5025. ISSN 0006-2960

Singh, Nisha and Vats, Asheema and Sharma, Aditi and Arora, Amit and Kumar, Ashwani (2017) The development of lower respiratory tract microbiome in mice. Microbiome, 5 (1). ISSN 2049-2618

Sinha, Kislay Kumar and Peddada, Nagesh and Jha, Pravin Kumar and Mishra, Anshul and Pandey, Krishna and Das, Vidya Nand Ravi and Ashish, . and Das, Pradeep (2017) Plasma Gelsolin Level in HIV-1-Infected Patients: An Indicator of Disease Severity. AIDS Research and Human Retroviruses, 33 (3). pp. 254-260. ISSN 0889-2229

Sristy, Shikha and Thakur, Krishan Gopal and Bhattacharyya, Mani Shankar (2017) Facile fabrication of lipase to amine functionalized gold nanoparticles to enhance stability and activity. RSC Advances, 7 (68). pp. 42845-42855. ISSN 2046-2069

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Thakur, A and Qureshi, Abid and Kumar, Manoj (2017) vhfRNAi: a web-platform for analysis of host genes involved in viral infections discovered by genome wide RNAi screens. Molecular BioSystems, 13 (7). pp. 1377-1387. ISSN 1742-206X

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Upadhyay, Udita and Srivastava, Suchita and Khatri, Indu and Nanda, Jagpreet Singh and Subramanian, Srikrishna and Arora, Amitand Singh, Jagmohan (2017) Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB. Molecular Biology of the Cell, 28 (8). pp. 1132-1146. ISSN 1059-1524

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Verma, Ashish and Ojha, Anup Kumar and Dastager, Syed G. and Natarajan, Rameshkumar and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2017) Domibacillus mangrovi sp. nov. and Domibacillus epiphyticus sp. nov., isolated from marine habitats of the central west coast of India. International Journal of Systematic and Evolutionary Microbiology, 67 (8). pp. 3063-3070. ISSN 1466-5026

Verma, Ashish and Ojha, Anup Kumar and Pal, Yash and Kumari, Parveen and Schumann, Peter and Gruber-Vodicka, Harald and Dastager, Syed G. and Natarajan, Ramesh Kumar and Mayilraj, S. and Krishnamurthi, Srinivasan (2017) An investigation into the taxonomy of “ Bacillus aminovorans ” and its reclassification to the genus Domibacillus as Domibacillus aminovorans sp. nov.Systematic and Applied Microbiology, 40 (7). pp. 458-467. ISSN 07232020

Verma, Ashish and Pal, Yash and Khatri, Indu and Ojha, Anup Kumar and Gruber-Vodicka, Harald and Schumann, Peter and Dastager, Syed and Subramanian, Srikrishna and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2017) Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius. Systematic and Applied Microbiology, 40 (7). pp. 411-422. ISSN 07232020

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Wilkinson, Katalin Andrea and Vidyarthi, Aurobind and Khan, Nargis and Agnihotri, Tapan and Siddiqui, Kaneez F. and Nair, Girish R.and Arora, Ashish and Janmeja, Ashok K. and Agrewala, Javed N. (2017) Antibody response against PhoP efficiently discriminates among healthy individuals, tuberculosis patients and their contacts. PLOS ONE, 12 (3). e0173769. ISSN 1932-6203

A

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) Evolutionary relationships between heme-binding ferredoxin α + β barrels. BMC bioinformatics, 17. p. 168. ISSN 1471-2105

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of Structural Biology, 196 (3). pp. 358-363. ISSN 10478477

Acharya, Giriraj and Kaur, Gurmeet and Subramanian, Srikrishna (2016) An atypical segment swap in the DN and DC domains of the Acr_tran family resistance-nodulation-cell division pump. Journal of structural biology. ISSN 1095-8657 (In Press)

Agrawal, Piyush and Bhalla, Sherry and Usmani, Salman Sadullah and Singh, Sandeep and Chaudhary, Kumardeep and Raghava, G.P.S. and Gautam, Ankur (2016) CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic acids research, 44 (D1). D1098-103. ISSN 1362-4962

Agrawal, Yamini and Narwani, Tarun and Subramanian, Srikrishna (2016) Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. BMC genomics, 17. p. 367. ISSN 1471-2164

Anil Kumar, Vijjamarri and Goyal, Rajni and Bansal, Roohi and Singh, Nisha and Sevalkar, Ritesh Rajesh and Kumar, Ashwani and Sarkar, Dibyendu (2016) EspR-dependent ESAT-6 Protein Secretion of Mycobacterium tuberculosis Requires the Presence of Virulence Regulator PhoP. The Journal of biological chemistry, 291 (36). pp. 19018-30. ISSN 1083-351X

Arif, Ehtesham and Sharma, Pankaj and Solanki, Ashish and Mallik, Leena and Rathore, Yogendra S and Twal, Waleed O and Nath, Samir K and Gandhi, Darpan and Holzman, Lawrence B and Ostap, E Michael and Ashish, . and Nihalani, Deepak (2016) Structural Analysis of the Myo1c and Neph1 Complex Provides Insight into the Intracellular Movement of Neph1. Molecular and cellular biology, 36 (11). pp. 1639-54. ISSN 1098-5549

Arora, Amit and Cameotra, Swaranjit Singh and Kumar, Rajnish and Balomajumder, Chandrajit and Singh, Anil Kumar and Santhakumari, B and Kumar, Pushpendra and Laik, Sukumar (2016) Biosurfactant as a Promoter of Methane Hydrate Formation: Thermodynamic and Kinetic Studies. Scientific reports, 6. p. 20893. ISSN 2045-2322

B

Bajaj, Abhay and Kumar, Anand and Yadav, Shivani and Kaur, Gurwinder and Bala, Monu and Singh, Nitin Kumar and Mathan Kumar, Rajendran and Manickam, Natesan and Mayilraj, Shanmugam (2016) Isolation and characterization of a novel Gram-negative bacterium Chromobacterium alkanivorans sp. nov., strain IITR-71T degrading halogenated alkanes. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Bhagyaraj, Ella and Nanduri, Ravikanth and Saini, Ankita and Dkhar, Hedwin Kitdorlang and Ahuja, Nancy and Chandra, Vemika and Mahajan, Sahil and Kalra, Rashi and Tiwari, Drishti and Sharma, Charu and Janmeja, Ashok Kumar and Gupta, Pawan (2016)Human Xenobiotic Nuclear Receptor PXR Augments Mycobacterium tuberculosis Survival. Journal of immunology , 197 (1). pp. 244-55. ISSN 1550-6606

Boradia, Vishant Mahendra and Patil, Pravinkumar and Agnihotri, Anushri and Kumar, Ajay and Rajwadi, Kalpesh Kumar and Sahu, Ankit and Bhagath, Naveen and Sheokand, Navdeep and Kumar, Manoj and Malhotra, Himanshu and Patkar, Rachita and Hasan, Navi and Raje, Manoj and Raje, Chaaya Iyengar (2016) Mycobacterium tuberculosis H37Ra: a surrogate for the expression of conserved, multimeric proteins of M.tb H37Rv. Microbial cell factories, 15 (1). p. 140. ISSN 1475-2859

C

Chander, Atul Munish and Kaur, Gurwinder and Nair, Ramesan Girish and Dhawan, Devinder Kumar and Kochhar, Rakesh and Mayilraj, Shanmugam and Bhadada, Sanjay Kumar (2016) Genome Sequencing of Serinicoccus chungangensis Strain CD08_5 Isolated from Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chander, Atul Munish and Nair, Ramesan Girish and Kaur, Gurwinder and Kochhar, Rakesh and Mayilraj, Shanmugam and Dhawan, Devinder Kumar and Bhadada, Sanjay Kumar (2016) Genome Sequence of Kocuria palustris Strain CD07_3 Isolated from the Duodenal Mucosa of a Celiac Disease Patient. Genome announcements, 4 (2). ISSN 2169-8287

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2016) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society, 91 (2). pp. 429-51. ISSN 1469-185X

Chaudhary, Kumardeep and Kumar, Ritesh and Singh, Sandeep and Tuknait, Abhishek and Gautam, Ankur and Mathur, Deepika and Anand, Priya and Varshney, Grish C and Raghava, G.P.S. (2016) A Web Server and Mobile App for Computing Hemolytic Potency of Peptides. Scientific reports, 6. ISSN 2045-2322

Chaudhary, Kumardeep and Nagpal, Gandharva and Dhanda, Sandeep Kumar and Raghava, G.P.S. (2016) Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. Scientific reports, 6. p. 20678. ISSN 2045-2322

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B and Korpole, Suresh (2016)Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and applied microbiology, 39 (1). pp. 25-32. ISSN 1618-0984

Chaudhry, Vasvi and Patil, Prabhu B (2016) Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis. Scientific reports, 6. p. 19263. ISSN 2045-2322

D

Dar, Showkat Ahmad and Gupta, Amit Kumar and Thakur, Anamika and Kumar, Manoj (2016) SMEpred workbench: a web server for predicting efficacy of chemically modified siRNAs. RNA biology. ISSN 1555-8584

Dar, Showkat Ahmad and Thakur, Anamika and Qureshi, Abid and Kumar, Manoj (2016) siRNAmod: A database of experimentally validated chemically modified siRNAs. Scientific reports, 6. p. 20031. ISSN 2045-2322

Dhanda, Sandeep Kumar and Chaudhary, Kumardeep and Gupta, Sudheer and Brahmachari, Samir Kumar and Raghava, G.P.S.(2016) A web-based resource for designing therapeutics against Ebola Virus. Scientific reports, 6. p. 24782. ISSN 2045-2322

Dhanda, Sandeep Kumar and Vir, Pooja and Singla, Deepak and Gupta, Sudheer and Kumar, Shailesh and Raghava, G.P.S. (2016) A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis. PloS one, 11 (4). e0153771. ISSN 1932-6203

Dhar, Jesmita and Kishore, Raghuvansh and Chakrabarti, Pinak (2016) A novel secondary structure based on fused five-membered rings motif. Scientific reports, 6. p. 31483. ISSN 2045-2322

G

Gahlawat, Geeta and Shikha, Sristy and Chaddha, Baldev Singh and Chaudhuri, Saumya Ray and Mayilraj, Shanmugam and Choudhury, Anirban Roy (2016) Microbial glycolipoprotein-capped silver nanoparticles as emerging antibacterial agents against cholera. Microbial cell factories. ISSN 1475-2859

Ganaie, Arsheed Ahmad and Trivedi, Garima and Kaur, Amanpreet and Jha, Sidharth Shankar and Anand, Shashi and Rana, Vibhutiand Singh, Amit and Kumar, Shekhar and Sharma, Charu (2016) Interaction of Erp Protein of Mycobacterium tuberculosis with Rv2212 Enhances Intracellular Survival of Mycobacterium smegmatis. Journal of bacteriology, 198 (20). pp. 2841-52. ISSN 1098-5530

Gani, Zahid and Boradia, Vishant Mahendra and Raghu Ram, Janaki and Suryavanshi, Prashant Mohan and Patil, Pravinkumar and Kumar, Santosh and Singh, Ranvir and Raje, Manoj and Raje, Chaaya Iyengar (2016) Purification and characterization of glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) from pea seeds. Protein expression and purification, 127. pp. 22-7. ISSN 1096-0279

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Gupta, Sudheer and Singh, Harinder and Raghava, G.P.S. (2016)Managing Drug Resistance in Cancer: Role of Cancer Informatics. Methods in molecular biology (Clifton, N.J.), 1395. pp. 299-312. ISSN 1940-6029

Gujar, Ravindra and Maurya, Neeraj and Yadav, Vinod and Gupta, Mamta and Arora, Saurabh and Khatri, Neeraj and Sen, Pradip(2016) c-Src Suppresses Dendritic Cell Antitumor Activity via T Cell Ig and Mucin Protein-3 Receptor. Journal of immunology (Baltimore, Md. : 1950), 197 (5). pp. 1650-62. ISSN 1550-6606

Gupta, Amit Kumar and Kaur, Karambir and Rajput, Akanksha and Dhanda, Sandeep Kumar and Sehgal, Manika and Khan, Md Shoaib and Monga, Isha and Dar, Showkat Ahmad and Singh, Sandeep and Nagpal, Gandharva and Usmani, Salman Sadullah and Thakur, Anamika and Kaur, Gazaldeep and Sharma, Shivangi and Bhardwaj, Aman and Qureshi, Abid and Raghava, G.P.S. and Kumar, Manoj (2016) ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.Scientific reports, 6. p. 32713. ISSN 2045-2322

Gupta, Sudheer and Chaudhary, Kumardeep and Kumar, Rahul and Gautam, Ankur and Nanda, Jagpreet Singh and Dhanda, Sandeep Kumar and Brahmachari, Samir Kumar and Raghava, G.P.S. (2016) Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine. Scientific reports, 6. p. 23857. ISSN 2045-2322

H

Haque, Farazul and Alfatah, Md and Ganesan, K and Bhattacharyya, Mani Shankar (2016) Inhibitory Effect of Sophorolipid on Candida albicans Biofilm Formation and Hyphal Growth. Scientific reports, 6. p. 23575. ISSN 2045-2322

Honnavar, Prasanna and Chakrabarti, Arunaloke and Prasad, Ghandam S and Singh, Pankaj and Dogra, Sunil and Rudramurthy, Shivaprakash M (2016) β-Endorphin enhances the phospholipase activity of the dandruff causing fungi Malassezia globosa and Malassezia restricta. Medical mycology. ISSN 1460-2709

Honnavar, Prasanna and Prasad, Gandham S and Ghosh, Anup and Dogra, Sunil and Handa, Sanjeev and Rudramurthy, Shivaprakash M (2016) Malassezia arunalokei sp. nov., a Novel Yeast Species Isolated from Seborrheic Dermatitis Patients and Healthy Individuals from India. Journal of clinical microbiology, 54 (7). pp. 1826-34. ISSN 1098-660X

I

Ishaq, Mohammad and Ojha, Rani and Sharma, Kapil and Sharma, Gaurav and Singh, Shrawan K and Majumdar, Sekhar (2016)Functional inhibition of Hsp70 by Pifithrin-μ switches Gambogic acid induced caspase dependent cell death to caspase independent cell death in human bladder cancer cells. Biochimica et biophysica acta, 1863 (11). pp. 2560-2573. ISSN 0006-3002

K

Kachhap, Sangita and Priyadarshini, Pragya and Singh, Balvinder (2016) Molecular dynamics simulations show altered secondary structure of clawless in binary complex with DNA providing insights into aristaless-clawless-DNA ternary complex formation. Journal of biomolecular structure & dynamics. pp. 1-15. ISSN 1538-0254 (In Press)

Kaundal, Soni and Uttam, Manju and Thakur, Krishan Gopal (2016) Dual Role of a Biosynthetic Enzyme, CysK, in Contact Dependent Growth Inhibition in Bacteria. PloS one, 11 (7). e0159844. ISSN 1932-6203

Kaur, Gurmeet and Subramanian, Srikrishna (2016) Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution. Scientific reports, 6. p. 32070. ISSN 2045-2322

Kaur, Gurwinder and Kumar, Narender and Mual, Poonam and Kumar, Anand and Kumar, Rajendran Mathan and Mayilraj, Shanmugam (2016) Brachybacterium aquaticum sp. nov., a novel actinobacterium isolated from sea water. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Gurwinder and Mual, Parveen and Kumar, Narender and Verma, Ashish and Kumar, Anand and Krishnamurthi, Srinivasan and Mayilraj, Shanmugam (2016) Microbacterium aureliae sp. nov., a novel actinobacterium member of the genus Microbacterium isolated from Aurelia aurita, the moon Jelly fish. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Kaur, Karambir and Gupta, Amit Kumar and Rajput, Akanksha and Kumar, Manoj (2016) ge-CRISPR - An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system. Scientific reports, 6. p. 30870. ISSN 2045-2322

Kaur, Simerpreet and Rana, Vibhuti and Singh, Pooja and Trivedi, Garima and Anand, Shashi and Kaur, Amanpreet and Gupta, Pawan and Jain, Amita and Sharma, Charu (2016) Novel mutations conferring resistance to kanamycin in Mycobacterium tuberculosis clinical isolates from Northern India. Tuberculosis (Edinburgh, Scotland), 96. pp. 96-101. ISSN 1873-281X

Khan, Mohd Shoaib and Gupta, Amit Kumar and Kumar, Manoj (2016) ViralEpi v1.0: a high-throughput spectrum of viral epigenomic methylation profiles from diverse diseases. Epigenomics, 8 (1). pp. 67-75. ISSN 1750-192X

Khan, Nargis and Aqdas, Mohammad and Vidyarthi, Aurobind and Negi, Shikha and Pahari, Susanta and Agnihotri, Tapan and Agrewala, J N (2016) Triggering through NOD-2 Differentiates Bone Marrow Precursors to Dendritic Cells with Potent Bactericidal activity. Scientific reports, 6. p. 27263. ISSN 2045-2322

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2016) Stimulation through CD40 and TLR-4 Is an Effective Host Directed Therapy against Mycobacterium tuberculosis. Frontiers in immunology, 7. p. 386.

Khan, Nargis and Vidyarthi, Aurobind and Amir, Mohammed and Mushtaq, Khurram and Agrewala, J N (2016) T cell Exhaustion in Tuberculosis: Pitfalls and Prospects. Critical reviews in microbiology. ISSN 1549-7828 (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Javed, Shifa and Agrewala, J N (2016) Innate immunity holding the flanks until reinforced by adaptive immunity against Mycobacterium tuberculosis infection. Frontiers in Microbiology : Infectious disease. ISSN 1093-4715

Khan, Nargis and Vidyarthi, Aurobind and Nadeem, Sajid and Negi, Shikha and Nair, Girish and Agrewala, J N (2016) Alteration in the gut microbiota provokes susceptibility to tuberculosis. Frontiers in Immunology. (In Press)

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Negi, Shikha and Aqdas, Mohammad and Nadeem, Sajid and Agnihotri, Tapan and Agrewala, J N (2016) Signaling through NOD-2 and TLR-4 Bolsters the T cell Priming Capability of Dendritic cells by Inducing Autophagy. Scientific reports, 6. p. 19084. ISSN 2045-2322

Khatri, Indu and Sharma, Shailza and Ramya, T N C and Subramanian, Srikrishna (2016) Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PloS one, 11 (6). e0156745. ISSN 1932-6203

Krishnan, Ramya and Menon, Rahul R and Likhitha, . and Busse, Hans-Jürgen and Tanaka, Naoto and Krishnamurthi, Srinivasan and Rameshkumar, N (2016) Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice. Research in microbiology. ISSN 1769-7123 (In Press)

Krishnan, Ramya and Menon, Rahul Ravikumar and Tanaka, Naoto and Busse, Hans-Jürgen and Krishnamurthi, Srinivasan and Rameshkumar, Natarajan (2016) Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India. PloS one, 11 (3). e0150322. ISSN 1932-6203

Kumar, Saurav and Bagchi, Sudeshna and Prasad, E.Senthil and Sharma, Anupma and Kumar, Ritesh and Kaur, Rishemjit and Singh, Jagvir and Bhondekar, Amol P (2016) Bacteriorhodopsin-ZnO hybrid as a potential sensing element for low-temperature detection of ethanol vapour. Beilstein journal of nanotechnology, 7. pp. 501-10. ISSN 2190-4286

L

Leo, Vincent V and Passari, Ajit K and Joshi, J Beslin and Mishra, Vineet K and Uthandi, Sivakumar and Ramesh, N and Gupta, Vijai K and Saikia, Ratul and Sonawane, Vijay C and Singh, Bhim P (2016) A Novel Triculture System (CC3) for Simultaneous Enzyme Production and Hydrolysis of Common Grasses through Submerged Fermentation. Frontiers in microbiology, 7. p. 447. ISSN 1664-302X

M

Mahajan, Sahil and Saini, Ankita and Kalra, Rashi and Gupta, Pawan (2016) Frienemies of infection: A chronic case of host nuclear receptors acting as cohorts or combatants of infection. Critical reviews in microbiology, 42 (4). pp. 526-34. ISSN 1549-7828

Maheshwari, Neeraj and Kantipudi, Satish and Maheshwari, Anand and Arora, Kashika and Vandana, . and Kwatra, Neha and Sahni, Girish (2016) Amino-Terminal Fusion of Epidermal Growth Factor 4,5,6 Domains of Human Thrombomodulin on Streptokinase Confers Anti-Reocclusion Characteristics along with Plasmin-Mediated Clot Specificity. PloS one, 11 (3). e0150315. ISSN 1932-6203

Malhotra, Himanshu and Sheokand, Navdeep and Kumar, Santosh and Chauhan, Anoop S and Kumar, Manoj and Jakhar, Priyankaand Boradia, Vishant M and Raje, Chaaya I and Raje, Manoj (2016) Exosomes: Tunable Nano Vehicles for Macromolecular Delivery of Transferrin and Lactoferrin to Specific Intracellular Compartment. Journal of biomedical nanotechnology, 12 (5). pp. 1101-14. ISSN 1550-7033

Malhotra, Neha and Chakraborti, Pradip K (2016) Eukaryotic-Type Ser/Thr Protein Kinase Mediated Phosphorylation of Mycobacterial Phosphodiesterase Affects its Localization to the Cell Wall. Frontiers in microbiology, 7. p. 123. ISSN 1664-302X

Mandal, Santi M and Chakraborty, Dipjyoti and Dutta, Suhrid R and Ghosh, Ananta K and Pati, Bikas R and Korpole, Suresh and Paul, Debarati (2016) Induction of nodD Gene in a Betarhizobium Isolate, Cupriavidus sp. of Mimosa pudica, by Root Nodule Phenolic Acids. Current microbiology, 72 (6). pp. 733-7. ISSN 1432-0991

Mawlankar, Rahul and Thorat, Meghana N and Krishnamurthi, Srinivasan and Dastager, Syed G (2016) Bacillus cellulasensis sp. nov., isolated from marine sediment. Archives of microbiology, 198 (1). pp. 83-9. ISSN 1432-072X

Mishra, Pradeep and Kaur, Suneet and Sharma, Amar Nath and Jolly, R S (2016) Characterization of an Indole-3-Acetamide Hydrolase from Alcaligenes faecalis subsp. parafaecalis and Its Application in Efficient Preparation of Both Enantiomers of Chiral Building Block 2,3-Dihydro-1,4-Benzodioxin-2-Carboxylic Acid. PloS one, 11 (7). e0159009. ISSN 1932-6203

Mual, Poonam and Singh, Nitin Kumar and Verma, Ashish and Schumann, Peter and Krishnamurthi, Srinivasan and Dastager, Syedand Mayilraj, Shanmugam (2016) Reclassification of Bacillus isronensisShivaji et al. 2009 as Solibacillus isronensis comb. nov. and emended description of genus Solibacillus Krishnamurthi et al. 2009. International journal of systematic and evolutionary microbiology, 66 (5). pp. 2113-20. ISSN 1466-5034

Muthu Krishnan, S (2016) Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach. Journal of theoretical biology, 409. pp. 27-37. ISSN 1095-8541

Mutreja, Ruchi and Jariyal, Monu and Pathania, Preeti and Sharma, Arunima and Sahoo, D K and Suri, C Raman (2016) Novel surface antigen based impedimetric immunosensor for detection of Salmonella typhimurium in water and juice samples. Biosensors & bioelectronics, 85. pp. 707-13. ISSN 1873-4235

N

Nallabelli, Nayudu and Patil, Prashant P and Pal, Vijay Kumar and Singh, Namrata and Jain, Ashish and Patil, Prabhu B and Grover, Vishakha and Korpole, Suresh (2016) Biochemical and genome sequence analyses of Megasphaera sp. strain DISK18 from dental plaque of a healthy individual reveals commensal lifestyle. Scientific reports, 6. p. 33665. ISSN 2045-2322

Nupur, L N U and Vats, Asheema and Dhanda, Sandeep Kumar and Raghava, G.P.S. and Pinnaka, Anil Kumar and Kumar, Ashwani(2016) ProCarDB: a database of bacterial carotenoids. BMC microbiology, 16. p. 96. ISSN 1471-2180

P

Pathak, Deepika and Bhat, Aadil Hussain and Sapehia, Vandana and Rai, Jagdish and Rao, Alka (2016) Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis. Scientific reports, 6. p. 28892. ISSN 2045-2322

Patil, Prashant P and Midha, Samriti and Kumar, Sanjeet and Patil, Prabhu B (2016) Genome Sequence of Type Strains of Genus Stenotrophomonas. Frontiers in microbiology, 7. p. 309. ISSN 1664-302X

Priyanka, Anu and Solanki, Vipul and Parkesh, Raman and Thakur, Krishan Gopal (2016) Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture. Proteins, 84 (10). pp. 1558-63. ISSN 1097-0134

Q

Qureshi, Abid and Kaur, Gazaldeep and Kumar, Manoj (2016) AVCpred: an integrated web server for prediction and design of antiviral compounds. Chemical biology & drug design. ISSN 1747-0285

R

Rai, Pradeep K and Chodisetti, Sathi Babu and Nadeem, Sajid and Maurya, Sudeep K and Gowthaman, Uthaman and Zeng, Weiguang and Janmeja, Ashok Kumar and Jackson, David C and Agrewala, J N (2016) A novel therapeutic strategy of lipidated promiscuous peptide against Mycobacterium tuberculosis by eliciting Th1 and Th17 immunity of host. Scientific reports, 6. ISSN 2045-2322 (In Press)

Rajput, Akanksha and Kaur, Karambir and Kumar, Manoj (2016) SigMol: repertoire of quorum sensing signaling molecules in prokaryotes. Nucleic acids research, 44 (D1). D634-9. ISSN 1362-4962

Randhawa, Anmoldeep and Chawla, Srishti and Mondal, Alok K (2016) Functional dissection of HAMP domains in NIK1 ortholog from pathogenic yeast Candida lusitaniae. Gene, 577 (2). pp. 251-7. ISSN 1879-0038

Randhawa, Harmandeep Kaur and Gautam, Ankur and Sharma, Minakshi and Bhatia, Rakesh and Varshney, Grish C and Raghava, G.P.S. and Nandanwar, Hemraj (2016) Cell-penetrating peptide and antibiotic combination therapy: a potential alternative to combat drug resistance in methicillin-resistant Staphylococcus aureus. Applied microbiology and biotechnology, 100 (9). pp. 4073-4083. ISSN 1432-0614

S

Saini, Ankita and Mahajan, Sahil and Gupta, Pawan (2016) Nuclear receptor expression atlas in BMDCs: Nr4a2 restricts immunogenicity of BMDCs and impedes EAE. European journal of immunology, 46 (8). pp. 1842-53. ISSN 1521-4141

Sankhyan, Anurag and Sharma, Chandresh and Dutta, Durgashree and Sharma, Tarang and Chosdol, Kunzang and Wakita, Takajiand Watashi, Koichi and Awasthi, Amit and Acharya, Subrat K and Khanna, Navin and Tiwari, Ashutosh and Sinha, Subrata (2016)Inhibition of preS1-hepatocyte interaction by an array of recombinant human antibodies from naturally recovered individuals. Scientific reports, 6. p. 21240. ISSN 2045-2322

Satpute, Surekha K and Kulkarni, Gauri R and Banpurkar, Arun G and Banat, Ibrahim M and Mone, Nishigandha S and Patil, Rajendra H and Cameotra, Swaranjit Singh (2016) Biosurfactant/s from Lactobacilli species: Properties, challenges and potential biomedical applications. Journal of basic microbiology. ISSN 1521-4028

Sawhney, Pooja and Katare, Keya and Sahni, Girish (2016) PEGylation of Truncated Streptokinase Leads to Formulation of a Useful Drug with Ameliorated Attributes. PloS one, 11 (5). e0155831. ISSN 1932-6203

Selvaraj, MuthuKrishnan and Puri, Munish and Dikshit, Kanak L. and Lefevre, Christophe (2016) BacHbpred: Support Vector Machine Methods for the Prediction of Bacterial Hemoglobin-Like Proteins. Advances in Bioinformatics, 2016. pp. 1-11. ISSN 1687-8027

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2016) Lipoprotein LprI of Mycobacterium tuberculosis Acts as a Lysozyme Inhibitor. The Journal of biological chemistry, 291 (6). pp. 2938-53. ISSN 1083-351X

Sharma, Astha and Prasad, E.Senthil and Chaturvedi, Harsh (2016) Photon induced separation of bio-nano hybrid complex based on carbon nanotubes and optically active bacteriorhodopsin. Optical Materials Express, 6 (4). p. 986. ISSN 2159-3930

Sharma, Gaurav and Khatri, Indu and Subramanian, Srikrishna (2016) Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. Genome biology and evolution, 8 (8). pp. 2520-9. ISSN 1759-6653

Sharma, Gaurav and Narwani, Tarun and Subramanian, Srikrishna (2016) Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. PloS one, 11 (2). e0148593. ISSN 1932-6203

Sharma, Kapil and Ishaq, Mohammad and Sharma, Gaurav and Khan, Mohammad Aslam and Dutta, Rajesh Kumar and Majumdar, Sekhar (2016) Pentoxifylline triggers autophagy via ER stress response that interferes with Pentoxifylline induced apoptosis in human melanoma cells. Biochemical pharmacology, 103 (1). pp. 17-28. ISSN 1873-2968

Sharma, Pankaj and Verma, Neha and Singh, Pradip Kumar and Korpole, Suresh and Ashish, . (2016) Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation. Scientific reports, 6. p. 22475. ISSN 2045-2322

Sheokand, Navdeep and Malhotra, Himanshu and Chauhan, Anoop Singh and Kumar, Manoj and Chaudhary, Surbhi and Patidar, Anil and Boradia, Vishant Mahendra and Raje, Chaaya Iyengar and Raje, Manoj (2016) Reverse overshot water-wheel retroendocytosis of Apo Transferrin extrudes cellular iron. Journal of cell science, 129. pp. 843-53. ISSN 1477-9137

Singh, Harinder and Raghava, G.P.S. (2016) BLAST-based structural annotation of protein residues using Protein Data Bank. Biology direct, 11 (1). p. 4. ISSN 1745-6150

Singh, Harinder and Srivastava, Hemant Kumar and Raghava, G.P.S. (2016) A web server for analysis, comparison and prediction of protein ligand binding sites. Biology direct, 11 (1). p. 14. ISSN 1745-6150

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2016) SATPdb: a database of structurally annotated therapeutic peptides. Nucleic acids research, 44 (D1). D1119-26. ISSN 1362-4962

T

Thakur, Anamika and Rajput, Akanksha and Kumar, Manoj (2016) MSLVP: prediction of multiple subcellular localization of viral proteins using a support vector machine. Molecular bioSystems, 12 (8). pp. 2572-86. ISSN 1742-2051

Tomar, Rachana and Sharma, Pankaj and Srivastava, Ankit and Bansal, Saurabh and Kundu, Bishwajit and Ashish, . (2016)Structural and functional insights into an archaeal L-asparaginase obtained through the linker-less assembly of constituent domains. Corrigendum. Acta crystallographica. Section D, Structural biology, 72 (Pt 1). p. 180. ISSN 2059-7983

Trivedi, Abhishek and Mavi, Parminder Singh and Bhatt, Deepak and Kumar, Ashwani (2016) Thiol reductive stress induces cellulose-anchored biofilm formation in Mycobacterium tuberculosis. Nature communications, 7. p. 11392. ISSN 2041-1723

Tuteja, Satish K and Chen, Rui and Kukkar, Manil and Song, Chung Kil and Mutreja, Ruchi and Singh, Suman and Paul, Ashok K and Lee, Haiwon and Kim, Ki-Hyun and Deep, Akash and Suri, C Raman (2016) A label-free electrochemical immunosensor for the detection of cardiac marker using graphene quantum dots (GQDs). Biosensors & bioelectronics, 86. pp. 548-56. ISSN 1873-4235

W

Wagner, Mark C and Myslinski, Jered and Pratap, Shiv and Flores, Brittany and Rhodes, George and Campos-Bilderback, Silvia Band Sandoval, Ruben M and Kumar, Sudhanshu and Patel, Monika and Ashish, . and Molitoris, Bruce A (2016) Mechanism of increased clearance of glycated albumin by proximal tubule cells. American journal of physiology. Renal physiology, 310 (10). F1089-102. ISSN 1522-1466

Y

Yadav, Ghanshyam S and Ravala, Sandeep K and Malhotra, Neha and Chakraborti, Pradip K (2016) Phosphorylation Modulates Catalytic Activity of Mycobacterial Sirtuins. Frontiers in microbiology, 7. p. 677. ISSN 1664-302X

A

Agrawal, Yamini and Khatri, Indu and Subramanian, Srikrishna and Shenoy,, Belle Damodara (2015) Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome biology and evolution, 7 (3). pp. 916-30. ISSN 1759-6653

Arora, Amit (2015) MicroRNA targets: potential candidates for indirect regulation by drugs. Pharmacogenetics and Genomics, 25 (3). pp. 107-125. ISSN 1744-6872

Arora, Amit and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate as an Upcoming Resource of Energy. Journal of Petroleum & Environmental Biotechnology, 06 (01). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh (2015) Techniques for Exploitation of Gas Hydrate (Clathrates) an Untapped Resource of Methane Gas. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Arora, Amit and Chandrajit, Balomajumder and Cameotra, Swaranjit Singh (2015) Natural Gas Hydrate (Clathrates) as an Untapped Resource of Natural Gas. Journal of Petroleum & Environmental Biotechnology, 06 (04). ISSN 21577463

Arora, Amit and Cameotra, Swaranjit Singh Chandrajit, Balomajumder (2015) Field Testing of Gas Hydrates - An Alternative to Conventional Fuels. Journal of Petroleum & Environmental Biotechnology, 06 (05). ISSN 21577463

B

Baindara, Piyush and Chaudhry, Vasvi and Mittal, Garima and Liao, Luciano M and Matos, Carolina O and Khatri, Neeraj and Franco, Octavio L and Patil, Prabhu B and Korpole, Suresh (2015) Characterization of the Antimicrobial Peptide Penisin, a Class Ia Novel Lantibiotic from Paenibacillus sp. Strain A3. Antimicrobial agents and chemotherapy, 60 (1). pp. 580-91. ISSN 1098-6596

Bankapalli, Leela Krishna and Mishra, Rahul Chandra and Singh, Balvinder and Raychaudhuri, Saumya (2015) Identification of Critical Amino Acids Conferring Lethality in VopK, a Type III Effector Protein of Vibrio cholerae: Lessons from Yeast Model System. PloS one, 10 (10). e0141038. ISSN 1932-6203

Bari, Vinay K and Sharma, Sushma and Alfatah, Md and Mondal, Alok K and Ganesan, K (2015) Plasma Membrane Proteolipid 3 Protein Modulates Amphotericin B Resistance through Sphingolipid Biosynthetic Pathway. Scientific reports, 5. p. 9685. ISSN 2045-2322

Bhatia, Rakesh and Gautam, Ankur and Gautam, Shailendra K and Mehta, Divya and Kumar, Vinod and Raghava, G.P.S. and Varshney, Grish C (2015) Assessment of SYBR green I dye-based fluorescence assay for screening antimalarial activity of cationic peptides and DNA intercalating agents. Antimicrobial agents and chemotherapy, 59 (5). pp. 2886-9. ISSN 1098-6596

Bhutani, Isha and Loharch, Saurabh and Gupta, Pawan and Madathil, Rethi and Parkesh,Raman (2015) Structure, dynamics, and interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 examined by molecular modeling, simulation, and electrostatic studies. PloS one, 10 (3). e0119771. ISSN 1932-6203

Bishnoi, Ritika and Khatri, Indu and Subramanian, Srikrishna and Ramya, T N C (2015) Prevalence of the F-type lectin domain.  Glycobiology, 25 (8). pp. 888-901. ISSN 1460-2423

C

Chandra, Vemika and Bhagyaraj, Ella and Nanduri, Ravikanth and Ahuja, Nancy and Gupta, Pawan (2015) NR1D1 ameliorates Mycobacterium tuberculosis clearance through regulation of autophagy. Autophagy, 11 (11). pp. 1987-1997. ISSN 1554-8635

Chandra, Vemika and Bhagyaraj, Ella and Parkesh, Raman and Gupta, Pawan (2015) Transcription factors and cognate signalling cascades in the regulation of autophagy. Biological reviews of the Cambridge Philosophical Society. ISSN 1469-185X

Chaudhry, Vasvi and Baindara, Piyush and Pal, Vijay Kumar and Chawla, Niharika and Patil, Prabhu B. and Korpole, Suresh (2015) Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed. Systematic and Applied Microbiology. ISSN 07232020

Chauhan, Anoop S and Rawat, Pooja and Malhotra, Himanshu and Sheokand, Navdeep and Kumar(1), Manoj and Patidar, Anil and Chaudhary, Surbhi and Jakhar, Priyanka and Raje, Chaaya I and Raje, Manoj (2015) Secreted multifunctional Glyceraldehyde-3-phosphate dehydrogenase sequesters lactoferrin and iron into cells via a non-canonical pathway. Scientific reports, 5. p. 18465. ISSN 2045-2322

Chodisetti, Sathi Babu and Gowthaman, Uthaman and Rai, Pradeep K and Vidyarthi, Aurobind and Khan, Nargis and Agrewala, J N(2015)Triggering through Toll-like receptor 2 limits chronically stimulated T-helper type 1 cells from undergoing exhaustion. The Journal of infectious diseases, 211 (3). pp. 486-96. ISSN 1537-6613

Chopra, Lipsy and Singh, Gurdeep and Jena, Kautilya Kumar and Verma, Himanshu and Sahoo, Debendra K (2015) Bioprocess development for the production of sonorensin by Bacillus sonorensis MT93 and its application as a food preservative. Bioresource Technology, 175. pp. 358-366. ISSN 09608524

Chopra, Lipsy and Singh, Gurdeep and Kumar Jena, Kautilya and Sahoo, Debendra K (2015) Sonorensin: A new bacteriocin with potential of an anti-biofilm agent and a food biopreservative. Scientific reports, 5. p. 13412. ISSN 2045-2322

D

Dhar, Jesmita and Chakrabarti, Pinak and Saini, Harpreet and Raghava, G.P.S. and Kishore, Raghuvansh (2015) ω- Turn: a novel β-turn mimic in globular proteins stabilized by main-chain to side-chain C−H···O interaction. Proteins, 83 (2). pp. 203-14. ISSN 1097-0134

Dixit, Pooja and Mehta, Ananya and Gahlawat, Geeta and Prasad, G. S. and Choudhury, Anirban Roy (2015) Understanding the effect of interaction among aeration, agitation and impeller positions on mass transfer during pullulan fermentation by Aureobasidium pullulans. RSC Adv., 5 (49). pp. 38984-38994. ISSN 2046-2069

Dkhar, Hedwin Kitdorlang and Gopalsamy, Anupriya and Loharch, Saurabh and Kaur, Amandeep and Bhutani, Isha and Saminathan, Kanmani and Bhagyaraj, Ella and Chandra, Vemika and Swaminathan, Kunchithapadam and Agrawal, Pushpa and Parkesh, Ramanand Gupta, Pawan (2015) Discovery of Mycobacterium tuberculosis α-1,4-glucan branching enzyme (GlgB) inhibitors by structure- and ligand-based virtual screening. The Journal of biological chemistry, 290 (1). pp. 76-89. ISSN 1083-351X

E

Ettayapuram Ramaprasad, Azhagiya Singam and Singh, Sandeep and Raghava, G.P.S. and Venkatesan, Subramanian (2015) AntiAngioPred: A Server for Prediction of Anti-Angiogenic Peptides. PloS one, 10 (9). e0136990. ISSN 1932-6203

G

Gautam, Ankur and Chaudhary, Kumardeep and Kumar, Rahul and Raghava, G.P.S. (2015) Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides. Methods in molecular biology (Clifton, N.J.), 1324. pp. 59-69. ISSN 1940-6029

Gautam, Ankur and Sharma, Minakshi and Vir, Pooja and Chaudhary, Kumardeep and Kapoor, Pallavi and Kumar, Rahul and Nath, Samir K and Raghava, G.P.S. (2015)Identification and characterization of novel protein-derived arginine-rich cell-penetrating peptides. European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V, 89. pp. 93-106. ISSN 1873-3441

Gowthaman, Uthaman and Mushtaq, Khurram and Tan, Amabel C and Rai, Pradeep K and Jackson, David C and Agrewala, Javed N(2015) Challenges and solutions for a rational vaccine design for TB-endemic regions. Critical reviews in microbiology, 41 (3). pp. 389-98. ISSN 1549-7828

Gupta, Amit Kumar and Kumar, Manoj (2015) HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas. Scientific reports, 5. p. 12522. ISSN 2045-2322

Gupta, Ashok Kumar and Parasar, Devraj and Sagar, Amin and Choudhary, Vikas and Chopra, Bhupinder Singh and Garg, Renu and Ganguly, Ashish and Khatri, Neeraj (2015) Analgesic and Anti-Inflammatory Properties of Gelsolin in Acetic Acid Induced Writhing, Tail Immersion and Carrageenan Induced Paw Edema in Mice. PloS one, 10 (9). e0135558. ISSN 1932-6203

Gupta, Sudheer and Kapoor, Pallavi and Chaudhary, Kumardeep and Gautam, Ankur and Kumar, Rahul and Raghava, G.P.S. (2015) Peptide toxicity prediction. Methods in molecular biology (Clifton, N.J.), 1268. pp. 143-57. ISSN 1940-6029

I

Islam, Zeyaul and Kumar, Adarsh and Singh, Suruchi and Salmon, Laurent and Karthikeyan, Subramanian (2015) Structural basis for competitive inhibition of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Vibrio cholerae. The Journal of biological chemistry, 290 (18). pp. 11293-308. ISSN 1083-351X

K

Kachhap, Sangita and Singh, Balvinder (2015)>Role of DNA conformation & energetic insights in Msx-1-DNA recognition as revealed by molecular dynamics studies on specific and nonspecific complexes. Journal of biomolecular structure & dynamics. pp. 1-14. ISSN 1538-0254

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The Ku-Mar zinc finger: A segment-swapped zinc ribbon in MarR-like transcription regulators related to the Ku bridge. Journal of structural biology, 191 (3). pp. 281-9. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The UBR-box and its relationship to binuclear RING-like treble clef zinc fingers. Biology direct, 10. p. 36. ISSN 1745-6150

Kaur, Gurmeet and Subramanian, Srikrishna (2015)The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon.Journal of structural biology, 190 (1). pp. 38-46. ISSN 1095-8657

Kaur, Gurmeet and Subramanian, Srikrishna (2015) A novel RING finger in the C-terminal domain of the coatomer protein α-COP. Biology direct, 10 (1). p. 70. ISSN 1745-6150

Kaur, Harneet and Dolma, Kunzes and Kaur, Navjot and Malhotra, Ankit and Kumar, Navinder and Dixit, Pooja and Sharma, Deepakand Mayilraj, S. and Choudhury, Anirban Roy (2015) Marine microbe as nano-factories for copper biomineralization. Biotechnology and Bioprocess Engineering, 20 (1). pp. 51-57. ISSN 1226-8372

Kaur, Karambir and Tandon, Himani and Gupta, Amit Kumar and Kumar, Manoj (2015) CrisprGE: a central hub of CRISPR/Cas-based genome editing. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Kaur, Suneet and Srivastava, Gautam and Sharma, Amar Nath and Jolly, R S (2015) Novel immunosuppressive agent caerulomycin A exerts its effect by depleting cellular iron content. British journal of pharmacology, 172 (9). pp. 2286-99. ISSN 1476-5381

Khan, Nargis and Pahari, Susanta and Vidyarthi, Aurobind and Aqdas, Mohammad and Agrewala, Javed N (2015)NOD-2 and TLR-4 Signaling Reinforces the Efficacy of Dendritic Cells and Reduces the Dose of TB Drugs against Mycobacterium tuberculosis. Journal of innate immunity. ISSN 1662-8128

Khan, Nargis and Vidyarthi, Aurobind and Pahari, Susanta and Agrewala, J N (2015)Distinct Strategies Employed by Dendritic Cells and Macrophages in Restricting Mycobacterium tuberculosis Infection: Different Philosophies but Same Desire. International reviews of immunology. ISSN 1563-5244

Kujur, Weshely and Gurram, Rama Krishna and Haleem, Nazia and Maurya, Sudeep K and Agrewala, J N (2015)Caerulomycin A inhibits Th2 cell activity: a possible role in the management of asthma. Scientific reports, 5. p. 15396. ISSN 2045-2322

Kumar, Anand and Kaur, Gurwinder and Bajaj, Abhay and Kaur, Navjot and Mathan Kumar, Rajendran and Singh, Nitin Kumar and Manickam, Natesan and Mayilraj, Shanmugam (2015) Taxonomic description and Genome sequence of Rheinheimera mesophila sp. nov., strain IITR-13T isolated from an industrial waste site. International Journal of Systematic and Evolutionary Microbiology. ISSN 1466-5026 (In Press)

Kumar, Rahul and Chauhan, Jagat Singh and Raghava, G.P.S. (2015) TIn Silico Designing and Screening of Antagonists against Cancer Drug Target XIAP. Current cancer drug targets, 15 (9). pp. 836-46. ISSN 1873-5576

Kumar, Ravi and Chaudhary, Kumardeep and Sharma, Minakshi and Nagpal, Gandharva and Chauhan, Jagat Singh and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic acids research, 43 (Databa). D956-62. ISSN 1362-4962

Kumar, Ravi and Chaudhary, Kumardeep and Singh Chauhan, Jagat and Nagpal, Gandharva and Kumar, Rahul and Sharma, Minakshi and Raghava, G.P.S. (2015)An in silico platform for predicting, screening and designing of antihypertensive peptides. Scientific Reports, 5. p. 12512. ISSN 2045-2322

L

Loharch, Saurabh and Bhutani, Isha and Jain, Kamal and Gupta, Pawan and Sahoo, Debendra K and Parkesh, Raman (2015)EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

M

Macdonald, Ramsay and Sarkar, Dibyendu and Amer, Brendan R and Clubb, Robert T (2015)Solution structure of the PhoP DNA-binding domain from Mycobacterium tuberculosis. Journal of biomolecular NMR, 63 (1). pp. 111-7. ISSN 1573-5001

Mahajan, Sahil and Saini, Ankita and Chandra, Vemika and Nanduri, Ravikanth and Kalra, Rashi and Bhagyaraj, Ella and Khatri, Neeraj and Gupta, Pawan (2015) Nuclear Receptor Nr4a2 Promotes Alternative Polarization of Macrophages and Confers Protection in Sepsis. The Journal of biological chemistry, 290 (30). pp. 18304-14. ISSN 1083-351X

Mathan Kumar, Rajendran and Kaur, Gurwinder and Kumar, Narender and Kumar, Anand and Singh, Nitin Kumar and Bala, Monuand Kaur, Navjot and Mayilraj, Shanmugam (2015)Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a novel halotolerant bacterium isolated from marine sediment. International journal of systematic and evolutionary microbiology. ISSN 1466-5034 (In Press)

Mathan Kumar., Rajenderan and Kaur, Gurwinder and Kumar, Anand and Kaur, Navjot and Bala, Monu and Singh, Nitin Kumar and Mayilraj, Shanmugam (2015)Taxonomic description and Genome sequence of Bacillus campisalissp. nov., a novel member of the genus Bacillusisolated from solar saltern. International journal of systematic and evolutionary microbiology. ISSN 1466-5026 (In Press)

Midha, Samriti and Bansal, Kanika and Sharma, Shikha and Kumar, Narinder and Patil, Prashant P and Chaudhry, Vasvi and Patil, Prabhu B (2015) Genomic Resource of Rice Seed Associated Bacteria. Frontiers in microbiology, 6. p. 1551. ISSN 1664-302X

Mushtaq, Khurram and Sheikh, Javaid A and Amir, Mohammed and Khan, Nargis and Singh, Balvinder and Agrewala, J N (2015) Rv2031c of Mycobacterium tuberculosis: a master regulator of Rv2028-Rv2031 (HspX) operon. Frontiers in microbiology, 6. p. 351. ISSN 1664-302X

N

Nagpal, Gandharva and Gupta, Sudheer and Chaudhary, Kumardeep and Kumar Dhanda, Sandeep and Prakash, Satya and Raghava, G.P.S. (2015)VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants. Scientific Reports, 5. p. 12478. ISSN 2045-2322

Nanduri, Ravikanth and Bhutani, Isha and Somavarapu, Arun Kumar and Mahajan, Sahil and Parkesh, Raman and Gupta, Pawan(2015)ONRLDB-manually curated database of experimentally validated ligands for orphan nuclear receptors: insights into new drug discovery.  Database : the journal of biological databases and curation, 2015. ISSN 1758-0463

Nanduri, Ravikanth and Mahajan, Sahil and Bhagyaraj, Ella and Sethi, Kanupriya and Kalra, Rashi and Chandra, Vemika and Gupta, Pawan (2015) The Active Form of Vitamin D Transcriptionally Represses Smad7 Signaling and Activates Extracellular Signal-regulated Kinase (ERK) to Inhibit the Differentiation of a Inflammatory T Helper Cell Subset and Suppress Experimental Autoimmune Encephalomyelitis. The Journal of biological chemistry, 290 (19). pp. 12222-36. ISSN 1083-351X

P

Pal, Mohan and Srivastava, Gautam and Sharma, Amar Nath and Kaur, Suneet and Jolly, R S (2015)Biocatalyzed asymmetric reduction of benzils to either benzoins or hydrobenzoins: pH dependent switch. Catal. Sci. Technol., 5 (8). pp. 4017-4028. ISSN 2044-4753

Pandey, Satish K. and Rishi, Praveen and Suri, C Raman and Vinayaka, Aaydha C. (2015)Anodic stripping voltammetry of anti-Vi antibody functionalized CdTe quantum dots for the specific monitoring of Salmonella enterica serovar Typhi. RSC Adv., 5 (107). pp. 88234-88240. ISSN 2046-2069

Panwar, Bharat and Raghava, G.P.S. (2015)Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides. Genomics, 105 (4). pp. 197-203. ISSN 1089-8646

Q

Qureshi, Abid and Tandon, Himani and Kumar, Manoj (2015)AVP-IC50 Pred: Multiple machine learning techniques-based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC50 ). Biopolymers, 104 (6). pp. 753-63. ISSN 1097-0282

R

Rajput, Akanksha and Gupta, Amit Kumar and Kumar, Manoj (2015Prediction and analysis of quorum sensing peptides based on sequence features. PloS one, 10 (3). e0120066. ISSN 1932-6203

Rathore, Yogendra S and Dhoke, Reema R and Badmalia, Maulik and Sagar, Amin and Ganguly, Ashish (2015)SAXS Data Based Global Shape Analysis of Trigger Factor (TF) Proteins from E. coli, V. cholerae, and P. frigidicola: Resolving the Debate on the Nature of Monomeric and Dimeric Forms. The journal of physical chemistry. B, 119 (20). pp. 6101-12. ISSN 1520-5207

Ravala, Sandeep K and Singh, Suruchi and Yadav, Ghanshyam S and Kumar, Sanjay and Karthikeyan, Subramanian and Chakraborti, Pradip K (2015)Evidence that phosphorylation of threonine in the GT motif triggers activation of PknA, a eukaryotic-type serine/threonine kinase from Mycobacterium tuberculosis. The FEBS journal, 282 (8). pp. 1419-31. ISSN 1742-4658

Rawat, Sanjay and Gupta, Pawan and Kumar, Anil and Garg, Prabha and Suri, C Raman and Sahoo, Debendra K (2015)Molecular mechanism of poly(vinyl alcohol) mediated prevention of aggregation and stabilization of insulin in nanoparticles. Molecular pharmaceutics, 12 (4). pp. 1018-30. ISSN 1543-8392

Rehan, Mohammad and Sagar, Amin and Sharma, Vandna and Mishra, Sanskruti and Ganguly, Ashish and Sahni, Girish (2015)Penta-L-lysine Potentiates Fibrin-Independent Activity of Human Tissue Plasminogen Activator. The journal of physical chemistry. B, 119 (42). pp. 13271-7. ISSN 1520-5207

S

Sebastian Samuel, Jesse and Kumar, Deepak and Babu Chodisetti, Sathi and Agrewala, Javed N and Singh, Balvinder and Guptasarma, Purnananda and Sarkar, Dibyendu (2015)Probing protease sensitivity of recombinant human erythropoietin reveals α3-α4 inter-helical loop as a stability determinant. Proteins, 83 (10). pp. 1813-22. ISSN 1097-0134

Sethi, Deepti and Mahajan, Sahil and Singh, Chaahat and Lama, Amrita and Hade, Mangesh Dattu and Gupta, Pawan and Dikshit, Kanak L (2015)Lipoprotein, LprI, of Mycobacterium tuberculosis acts as a lysozyme inhibitor. The Journal of biological chemistry. ISSN 1083-351X

Shukla, Abha and Cameotra, Swaranjit Singh (2015)Saving Petroleum using Smart Strategies. Journal of Petroleum & Environmental Biotechnology, 06 (03). ISSN 21577463

Siddiqui, K F and Amir, M and Khan, N and Krishna, G Rama and Sheikh, J A and Rajagopal, K and Agrewala, J N (2015)Prime-boost vaccination strategy with bacillus Calmette-Guérin (BCG) and liposomized alpha-crystalline protein 1 reinvigorates BCG potency. Clinical and experimental immunology. ISSN 1365-2249 (In Press)

Singh, Appu Kumar and Manjasetty, Babu and Balasubramani, G L and Koul, Sukirte and Kaushik, Abhishek and Ekka, Mary Krishnaand Singh, Vijay and Kumaran, Sangaralingam (2015)Crystal Structure of Fad35R from Mycobacterium tuberculosis H37Rv in the Apo-State. PloS one, 10 (5). e0124333. ISSN 1932-6203

Singh, Harinder and Gupta, Sudheer and Gautam, Ankur and Raghava, G.P.S. (2015) Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines. Methods in molecular biology (Clifton, N.J.), 1348. pp. 327-40. ISSN 1940-6029

Singh, Harinder and Kumar, Rahul and Singh, Sandeep and Chaudhary, Kumardeep and Gautam, Ankur and Raghava, G.P.S. (2015)Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines. BMC cancer, 16 (1). p. 77. ISSN 1471-2407

Singh, Harinder and Singh, Sandeep and Raghava, G.P.S. (2015)In silico platform for predicting and initiating β-turns in a protein at desired locations. Proteins, 83 (5). pp. 910-21. ISSN 1097-0134

Singh, Harinder and Singh, Sandeep and Singla, Deepak and Agarwal, Subhash M and Raghava, G.P.S. (2015)QSAR based model for discriminating EGFR inhibitors and non-inhibitors using Random forest. Biology direct, 10. p. 10. ISSN 1745-6150

Singh, Nisha and Kumar, Ashwani (2015)Virulence Factor SenX3 Is the Oxygen-Controlled Replication Switch ofMycobacterium tuberculosis.  Antioxidants & Redox Signaling, 22 (7). pp. 603-613. ISSN 1523-0864

Singh, Pradip Kumar and Kumari, Annu and Chawla, Niharika and Pinnaka, Anil Kumar and Korpole, Suresh (2015)Rhodococcus lactis sp. nov., an actinobacterium isolated from sludge of a dairy waste treatment. International journal of systematic and evolutionary microbiology, 65. ISSN 1466-5034

Singh, Pradip Kumar and Solanki, Vipul and Sharma, Shalley and Thakur, Krishan Gopal and Krishnan, Beena and Korpole, Suresh(2015)The intramolecular disulfide-stapled structure of laterosporulin, a class IId bacteriocin, conceals a human defensin-like structural module. The FEBS journal, 282 (2). pp. 203-14. ISSN 1742-4658

Singh, Sandeep and Chaudhary, Kumardeep and Dhanda, Sandeep Kumar and Bhalla, Sherry and Usmani, Salman Sadullah and Gautam, Ankur and Tuknait, Abhishek and Agrawal, Piyush and Mathur, Deepika and Raghava, G.P.S. (2015)SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Research, 44 (D1). D1119-D1126. ISSN 0305-1048

Singh, Sandeep and Singh, Harinder and Tuknait, Abhishek and Chaudhary, Kumardeep and Singh, Balvinder and Kumaran, S and Raghava, G.P.S. (2015)PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues. Biology direct, 10 (1). p. 73. ISSN 1745-6150

Singh, Satish and Rathore, Yogendra Singh and Bhando, Timsy and Hade, Mangesh Dattu and Ganguly, Ashish and Dikshit, Kanak L(2015) Bilobed shape of PadA reveals the connectivity from single to multi-domain bacterial plasminogen activators. International journal of biological macromolecules, 78. pp. 370-8. ISSN 1879-0003

Sonkusre, Praveen and Singh Cameotra, Swaranjit (2015)Biogenic selenium nanoparticles inhibit Staphylococcus aureus adherence on different surfaces. Colloids and surfaces. B, Biointerfaces, 136. pp. 1051-7. ISSN 1873-4367

Srinivasan, Vijaya Bharathi and Vaidyanathan, Vasanth and Rajamohan, Govindan (2015)AbuO, a TolC-like outer membrane protein of Acinetobacter baumannii, is involved in antimicrobial and oxidative stress resistance. Antimicrobial agents and chemotherapy, 59 (2). pp. 1236-45. ISSN 1098-6596

Srinivasan, Vijaya Bharathi and Venkataramaiah, Manjunath and Mondal, Amitabha and Rajamohan, Govindan (2015)Functional Characterization of AbeD, an RND-Type Membrane Transporter in Antimicrobial Resistance in Acinetobacter baumannii. PloS one, 10 (10). e0141314. ISSN 1932-6203

Srivastava, Gautam and Pal, Mohan  and Kaur, Suneet and Jolly, R S (2015)A highly efficient designer cell for enantioselective reduction of ketones. Catalysis Science & Technology, 5 (1). pp. 105-108. ISSN 2044-4753

T

Tyagi, Atul and Tuknait, Abhishek and Anand, Priya and Gupta, Sudheer and Sharma, Minakshi and Mathur, Deepika and Joshi, Anshika and Singh, Sandeep and Gautam, Ankur and Raghava, G.P.S. (2015) CancerPPD: a database of anticancer peptides and proteins. Nucleic acids research, 43. D837-43. ISSN 1362-4962

Tyagi, Mohit and Taxak, Nikhil and Bharatam, Prasad V and Nandanwar, Hemraj and Kartha, K P Ravindranathan (2015)Mechanochemical click reaction as a tool for making carbohydrate-based triazole-linked self-assembling materials (CTSAMs). Carbohydrate research, 407. pp. 137-47. ISSN 1873-426X

V

Vaidya, Bhumika and Kumar, Ravinder and Korpole, Suresh and Tanuku, Naga Radha Srinivas and Pinnaka, Anil Kumar (2015)Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water. International journal of systematic and evolutionary microbiology, 65 (7). pp. 2056-63. ISSN 1466-5034

Venugopalan, Paloth and Kishore, Raghuvansh (2015)Antiparallel Self-Association of a γ,α-Hybrid Peptide: More Relevance of Weak Interactions. Chemistry: an Asian journal. ISSN 1861-471X

Verma, Ashish and Mual, Poonam and Mayilraj, Shanmugam and Krishnamurthi, Srinivasan (2015)Tamilnaduibacter salinus gen. nov., sp. nov., a halotolerant Gammaproteobacterium within the family Alteromonadaceae isolated from a salt-pan in Tamilnadu, India. International journal of systematic and evolutionary microbiology, 65 (10). pp. 3248-3255. ISSN 1466-5034

Verma, Deepshikha and Das, Lahari and Gambhir, Vandana and Dikshit, Kanak Lata and Varshney, Grish C (2015)Heterogeneity among Homologs of Cutinase-Like Protein Cut5 in Mycobacteria. PloS one, 10 (7). e0133186. ISSN 1932-6203

Vyas, B. and Singh, A.K and Cameotra, Swaranjit Singh (2015)Sorption behaviour of maneb in the agriculture soils and its correlation with soil properties. International Journal of Engineering Research and Science, 1 (8). ISSN 23956992

W

Walia, Navpreet kaur and Cameotra, Swaranjit Singh (2015)Lipopeptides: Biosynthesis and Applications. Journal of Microbial & Biochemical Technology, 07 (02). ISSN 19485948

Y

Yadav, Savita and Karthikeyan, Subramanian (2015)Structural and biochemical characterization of GTP cyclohydrolase II from Helicobacter pylori reveals its redox dependent catalytic activity. Journal of structural biology, 192 (1). pp. 100-15. ISSN 1095-8657